HMM Seed Alignment: TIGR04035
Download Alignment>STRSA0001_2014/184-244
WHYRNENGDDYI-DGHTID-GVKVYF-D-YK-GRQVKG-RFGLDQ-----HF--YDKDSG---ALVTSSYVND--GYNT-
>STRSA0001_2014/306-366
WYYIGNDGKILK-GPQTID-GVKVYFSN-YD-GIQVKG-DFASDE-----HY--YDKDSG---ALVTNRFVHS---MYD-
>STRSA0001_2014/548-612
-YYAGDDGTILT-GRQTIN-GMDVYF---ENTGVQVKG-RFISDYSGKNFRY--YDKDSG---ALVKNQYVIA--YNST-
>STRSA0001_2014/687-747
WYYVGNDGKILT-GYHTID-GVDVYF-D-NN-GVQAKG-TFDSND-----RF--HDKDTG---GLIYNQFITV--KDKT-
>STRSA0001_2014/748-806
-YYIDDKGNPVK-GLAVIK-NTEYFF-D-KQKGTQIKG-DFAVNG-----KY--YDGITG---ALVTNSYVRV----GS-
>STRSA0001_2014/808-871
WYYVNSKGRRLK-GAQIIN-NVAVYF-NPQN-GKQLKG-GFDEDG-----YF--YDKDSGAKTDLGKNHYVQI---NDA-
>STRSA0001_2014/949-1012
WYYANDQGILLK-GSQTID-GVNVYF-HPYYFGGQAK--DLVLDG-----YY--YDKDTGARQEIPKNTFFKA----GNK
>STRSA0001_2014/1156-1218
WYYFGPDGKALI-FDQVIN-GQHLYF-R-NN-GKQVKG-QFISDYKGT--RY--YDENSG---ELVTNQTRTI---NGV-
>NTL02LM0798|LEUM_0857/1166-1228
WYYFDNDGYMVV-GGQEIN-GKKYYF-L-PN-GVELQD-AYLSDGTS---EY--YYSSDG---RQISNQYYQG--SDNN-
>NTL02LM0798|LEUM_0857/1299-1363
WLYLNDSGVAVT-GPQNIN-GQNLYF-N-ED-GIQVKG-EAITDNSGNI-HY--YDRSTG---NMVVNSWGET--NNGS-
>NTL02LM0798|LEUM_0857/1555-1619
WMYLDDDGVAAT-GAQKIN-GQELYF-D-NN-GKQVKN-DKVINDDGTI-NY--YTGMSG---EKLKNDFGEL--PDGS-
>NTL02LM0798|LEUM_0857/1620-1684
WMYLDNQGNAVI-GAQKIN-GQNLYF-K-TD-GRQVKG-EANVDSSGEM-HF--YDPDSG---ELITNRFEQV--ASGV-
>NTL02LM0798|LEUM_0857/1834-1898
WVYRGANDQILK-GLQNIN-GRLQYF-DLTT-GAQLKG-GAANYDGNL--YY--FESSDG---NLVSKIQQSY--STGN-
>STRSA0001_2016/195-257
WYYKDANGKNLI-GLNYVD-NVPVYF-S-QD-GIQIKG-GFAEDG-----RY--YDKDSG---ALVTKTFKELLTYIGR-
>STRSA0001_2016/270-330
WYYLDADGRPLK-GPQNLG-GTNMYF-F-PN-GAQVKG-RFAPDG-----HY--YDKDSG---ALVTNRFVHI--YNWN-
>STRSA0001_2016/379-443
YYYVDAKGNKLT-GPQTLN-GIHVYF-D-QN-GRQLRS-EFKFDEDGTV-HY--YDAKNG---ARAENTIVRT--NTGA-
>STRSA0001_2016/551-614
WVYVNDKGDKLK-GEQTIN-GVKVYF-D-DFTGIQVKG-HFAPNG-----KY--YDKDSG---ALVTNAFKEILTYIGR-
>STRSA0001_2010/177-239
WYYEDANGKKLT-GDQTID-NVRVSF-W-ED-GKQIKG-PQIVNYKLY--RY--FDDNTG---QLQTKRYLEY---KGN-
>STRSA0001_2010/482-545
WYYKNASGENLI-GSQIIK-GQRVFF-R-DN-GQQVKG-AYLDIYNDLK-GY--YDINTG---NLVTNRYVEV---NGN-
>STRSA0001_2010/689-749
WYYFTKDGTAAT-GEVEIN-GQKLYF-D-NPWGFQTKG-RVAENG-----KF--YDKDSG---ELVTNTFREG---LTS-
>STRSA0001_2010/873-935
FYYVDVNGDKVT-GEQTID-NVPVYF-H-SD-GKQAKG-ELITVDGKI--HY--YDANSG---ARLSNIDITI---KGQ-
>SGO_0497/1172-1234
WYYFDNQGYLVT-GAREID-GKQLYF-M-KN-GVQLRD-ALQEDENGN--QY--YYDKTG---AKVLNRYYTS---DGQ-
>SGO_0497/1236-1300
WRYFDAKGVMAR-GLVKIG-DGQQYF-D-QN-GYQVKG-KVVRAKDGKL-RY--FDKDSG---NAVINRFAQG--DNPS-
>SGO_0497/1302-1366
WYYFGADGVALT-GLQKIG-QQTLYF-G-QD-GKQVKG-QVVMLADKSI-RY--FDANSG---EMAVNKFAEG--AKNE-
>SGO_0497/1497-1560
WYYFDQDGKAVT-GLKTIN-NQVLYF-G-QD-GKQVKG-QVVYVDGAE--RY--FDPKSG---DMVRNKWIRL--EDGT-
>STRSA0001_2012/190-252
-YYVDTKGQLVT-GPKEIN-GFQYYF-N-ND-GTMVKG-QLRKVDDKL--HF--YDENDG---KLVTDRFITF--KDNH-
>STRSA0001_2012/560-624
WYYVDENGQKLI-GNQIVD-SYHVCF-D-GN-GRQLKG-EASYSNSGAPKHY--YDLHNG---QMVINSLIQI---DGK-
>STRSA0001_2012/852-911
FYYFGSEGIALK-GEHSIN-GETVFF-D-EN-GEQVKG-GFAKNG-----KY--YDKHTG---NLARNTFRER---TVR-
>STRSA0001_2012/927-986
-YYLDNSGYKVS-GYQIIN-GEDYYF-Y-PD-GPQLKG-DFAPDG-----RY--HDKDTG---ALVTKRYVQI--KPWN-
>STRSA0001_2012/1032-1095
WYYVDENSQKVT-GHKTID-NVKVYF-D-KD-GKQAKG-IVADDG-----YY--YDKNNGELVDLGRDKFVDV---DGYR
>STRSA0001_2023/288-348
WYYLNNSGQIIK-GSHIIN-GAQVYF-D-EN-GIQIKG-DFDKEN-----RY--YDEHTG---KLVTNRFVTV--KDKN-
>STRSA0001_2023/349-408
-YFIGAKGIPVK-GATLID-GKEYYF-D-NKTGAQVKG-DFGGNG-----KY--YDTSTG---ALVTNRYVNV---DKY-
>STRSA0001_2023/409-472
WYYVDAEGKPLK-GSQTIN-NVPVYF-D-SYYGRQVKG-DFGDDG-----YY--YDKDSGVRITLEKNRYHNI---NNH-
>STRSA0001_2023/550-613
WFYADKQGNILK-GAHTID-GVPVYF-D-DHLGTQFK--NVVKNG-----HY--YDKDTGEQKEVPRNQFVHV--DNGL-
>STRSA0001_1190/153-214
WYYL-KDGKNLT-GAQNVD-HFDLYF-H-ED-GKQAKG-EIITENGQS--FY--YDKANG---RKVTNTSINI---DGQ-
>STRSA0001_1190/245-308
WYYLGKDGKPVT-GAQNID-GFNLYF-H-ED-GRQAKN-EIVTINGDS--YY--FDKDNG---RRVTGRQYLD--YANH-
>STRSA0001_1190/420-482
WYYFGKDGKALH-GFQTVD-GSLHYF-N-DS-GQQVKG-DFLYYDNDI--YY--FDKDNG---NPVTNQFINR---DNS-
>STRSA0001_1190/483-545
WYYFGADGKAVS-GFQTIN-GQNLYF-H-EY-GVQAKG-QLVTI-DGKT-YY--FDPNTG---DKWVNRSLTL---NGT-
>STRSA0001_1190/576-639
WYYYDANGKKVT-GLQTIN-KDLYYF---NDKGQQVRG-AFFTIGDKH--YF--ASKDTG---AVLRNAFYHD--TSTD-
>STRSA0001_1190/835-896
--YLYENGQKVT-GLKTFD-GVSYYF-Y-DD-GRQAKG-TEVTINGKT--YQ--FDQLTG---IMTRNAFSKS--YNYE-
>STRSA0001_1190/976-1037
-YYYNDKGEKVT-GFQEVD-GKVLYF-D-AE-GKQVLG-RFVTVDNYT--YY--LDPKTG---ERYSNRSVLI---DGK-
>STRSA0001_1137/166-228
WYYI-KDGKALT-GMQNID-NVNVYF-D-AD-GKQVKG-DTRHVNGST--YH--FEKDSG---QLTRSAFASD--KNGN-
>STRSA0001_1137/229-292
WYYLGQDGKALI-GKQVID-NIPLYF-Y-PN-GVQAKD-AFVVLDGNS--YY--FQKDTG---QLVRDRFWSD--DDGN-
>STRSA0001_1137/293-355
WYYSDKEGKLLT-GEQTID-GFDMYF-Y-PD-GVQAKG-EIVTIGIEP--YY--FDKDSG---HKVINTDITI---NGK-
>STRSA0001_1137/391-453
WYYYTATGEKLK-GWQNVD-GVTLYF-D-EE-GRQAKD-GERIIDGSH--YY--FSHYSG---AVKTNYWHTW---SIE-
>STRSA0001_1137/792-855
WYYFDNEGKAVT-GLHSID-NVTLYF-D-KE-GKQAKG-RLVEIDGQT--HY--FDRDSG---AMWTNRTLEL---NGIR
>STRSA0001_1137/880-943
WAYIKENGQLAT-GLQIIN-HQKYYF-D-PT-GKQAKG-KRLLLDGKY--YF--FDKDTG---AMFVNKFHET--GDYF-
>NTL02SM0912|SMU_1004/1097-1160
WYYFDNNGYMVT-GAQSIN-GVNYYF-L-SN-GLQLRD-AILKNEDGT--YA--YYGNDG---RRYENGYYQF--MSGV-
>NTL02SM0912|SMU_1004/1161-1224
WRHFN-NGEMSV-GLTVID-GQVQYF-D-EM-GYQAKG-KFVTTADGKI-RY--FDKQSG---NMYRNRFIEN--EEGK-
>NTL02SM0912|SMU_1004/1225-1289
WLYLGEDGAAVT-GSQTIN-GQHLYF-R-AN-GVQVKG-EFVTDRYGRI-SY--YDSNSG---DQIRNRFVRN--AQGQ-
>STRSA0001_2008/1194-1257
WYYFDKNGNMVT-GEQVID-GKKYFF-L-DN-GLQLRH-VLRQGSDGHV-YY--YDPK-G---VQAFNGFYDF---AGPR
>STRSA0001_2008/1327-1389
WYYLDSNGYAVT-GLQTIN-GKQYYF-D-NE-GRQVKG-HFVTINNQR--YF--LDGDSG---EIARSRFVTE---NNK-
>STRSA0001_2008/1390-1449
WYYVDGNGKLVK-GAQVIN-GNHYYF-N-ND-YSQVKG-AWANG------RY--YDGDSG---QAVTNRFVQV--GANQ-
>STRSA0001_2008/1450-1513
WAYLNQNGQKVV-GLQHIN-GKLYYF-E-GN-GVQAKG-KLLTYKGKK--YY--FDANSG---EAVTNRFIQI--SRGV-
>NTL02SM0826|SMU_910/1127-1190
WYYFDNNGHMVY-GLQHLN-GEVQYF-L-SN-GVQLRE-SFLENADGS--KN--YFGHLG---NRYSNGYYSF--DNDS-
>NTL02SM0826|SMU_910/1192-1256
WRYFDASGVMAV-GLKTIN-GNTQYF-D-QD-GYQVKG-AWITGSDGKK-RY--FDDGSG---NMAVNRFAND--KNGD-
>NTL02SM0826|SMU_910/1257-1320
WYYLNSDGIALV-GVQTIN-GKTYYF-G-QD-GKQIKG-KIITDNGKL--KY--FLANSG---ELARNIFATD--SQNN-
>NTL02SM0826|SMU_910/1321-1384
WYYFGSDGVAVT-GSQTIA-GKKLYF-A-SD-GKQVKG-SFVTYNGKV--HY--YHADSG---ELQVNRFEAD--KDGN-
>NTL02SM0826|SMU_910/1385-1449
WYYLDSNGEALT-GSQRIN-GQRVFF-T-RE-GKQVKG-DVAYDERGLL-RY--YDKNSG---NMVYNKVVTL--ANGR-
>STRSA0001_2011/177-236
WHY-KKDGKDLT-GPNLID-GQHVYF-D-KD-GKQVKG-NFAQDG-----HY--YDGELG---HLTTESFVTT--GDNH-
>STRSA0001_2011/237-300
WYYVDKTGEKVT-GLQEIG-DKTYHF---NDKGLQTKG-QRVVIEGKG--YY--FHPENG---ELWNNKIALY--HSTR-
>STRSA0001_2011/484-543
WYYVDKSSYPLK-GEQVID-YVNVYF-R-DD-YSQVKG-DFAPNG-----HY--YDKDSG---ALVTNRYVEK---DGK-
>STRSA0001_2011/544-603
WYYVNDKGDKLI-GAQTIG-GVEVYF-D-KD-GVQAKG-IFANAD-----HF--YDKDTG---AAVRDQIVEV---DGK-
>STRSA0001_1129/1128-1191
WYYFGADGKMTK-GAQTIN-KKDYYF-F-DN-GIQLRN-ALRRANNGY--TY--YYGLDG---AMVKNAFVDF--DDKR-
>STRSA0001_1129/1331-1394
WNYFDKEGNRVT-GRQYID-GHLYYF-K-ED-GSQAKG-EIIEENGIK--YY--YEPESG---ILASGRYLQV--GDDQ-
>STRSA0001_1129/1395-1459
WMYFKQDGSLAI-GQVRADHGYLKYF-D-KN-GIQVKG-KTIVEDGKT--YY--YDAHSG---ALVTSSFAEI--APNQ-
>STRSA0001_1129/1460-1523
WSYFNTDGQALK-GKWTIN-GKEYYF-D-QN-GIQYKG-KAVKVGSRY--KY--YDENDG---QPVTNRFAQI--EPNV-
>STRSA0001_1189/150-212
WYYI-KDNQKLT-GFQTVD-GVPLYF-D-QD-GIQAKG-NFVTVDNET--YY--FDKDSG---RKLTNQFVTD---GGYG
>STRSA0001_1189/213-276
WYYLGADGKAVK-GAQTID-NFDLYF-D-DR-GYQIKG-SLVNI-GEQT-YY--FDPYNG---RKVKDKKIYV--HGGT-
>STRSA0001_1189/391-453
WSYYDGFGHKLI-GFHNID-GVNVYF-D-DN-GIQAKG-KITTIGTDT--YF--FEKDNG---AMRTNQLSVI---PTR-
>STRSA0001_1286/1303-1365
-YYANNEGDVLR-GAQTIN-GDELYF-D-ES-GKQVKG-EFVNNPDGTT-SY--YDAITG---VKLVDTSLVV---NGQ-
>STRSA0001_1286/1391-1455
WFYADSHGRNVT-GAQIIN-GQHLYF-D-AN-GRQVKG-GFVMNTDGSR-SF--YHWNTG---DKLVSTFFTT--GHDR-
>STRSA0001_1286/1456-1520
WYYADDKGNVVT-GAQVIN-GQKLFF-A-TD-GKQVKG-DFATNANGSR-SY--YHGATG---NKLVSTFFTT--GDNN-
>STRSA0001_1286/1521-1585
WYYADAKGEVVV-GEQTIN-GQNLYF-D-QT-GKQVKG-ATATNPDGSI-SY--YDVHTG---EKVINRWVKI--PSGQ-
>NTL02LM1684|LEUM_1752/1329-1393
WSYFGADGIAVT-GAQTIS-GQKLFF-D-AD-GQQIKG-KEATDKKGKV-HY--YDANSG---EMITNRFEKL--SDGS-
>NTL02LM1684|LEUM_1752/1394-1458
WAYFNKKGNIVT-GAQVIN-GQHLFF-E-SN-GNQVKGREYTATDGKM--RY--YDADSG---DMVTNRFERI--SDGS-
>STRSA0001_2007/353-417
-RYFDCYGHMAT-GLIEMG-GTTFYF-D-TQTGIQAKD-KFIRFSDGRI-RY--FIPDTG---NMAVNTFVQN--KENQ-
>STRSA0001_2007/419-481
WYYLDEHGYAVT-GKRIIN-GKEYCF-D-SE-GRQIKG-QMMQQGNKQ--YY--ISAQTG---EMAVSRFIFE---NNN-
>STRSA0001_2007/482-541
WYYADAFGCLVQ-GAKVID-GKLYYF-N-KD-HSQLKG-GWAEG------RY--YDTVTG---QAVINQFIQI--VANQ-
>STRSA0001_1288/1156-1220
FRYFSPTGEMAV-GLTYAG-GGLQYF-D-EN-GFQAKGTKYVTPDGKL--YF--FDKNSG---NAYTNRWAEI---DGIW
>STRSA0001_1288/1244-1306
WFYRDAAGKNVT-GALTLD-GHEYYF-R-AN-GAQVKG-EFVTENGKI--SY--YTVDNG---YKVKDKFFEV---NGK-
>STRSA0001_1288/1350-1414
WYYAKDNGEIVT-GAYSVR-GKNYYF-K-ED-GSQVKG-DFVKNADGSL-SY--YDKDSG---ERLNNRFLTT--GNNV-
>STRSA0001_1288/1415-1477
WYYF-KDGKAVT-GRQNID-GKEYYF-D-HL-GRQVKG-SPISTPKGV--EY--YESVLG---ERVTNTWITF--QDGK-
>STRSA0001_2013/337-400
WYYMNTDGKLVT-GPQTID-GLTYYF-D-SD-GRQVKG-ERRKVNGKS--YF--YDPDNG---ALVTNRLVTF--KAGR-
>STRSA0001_2013/531-594
WYYYDEYGQPGV-GAETID-GYDMYF-HFGT-RRQAKG-EFVDVNGKV--YY--FDKDNG---RKVKDTTFDI---NGK-
>STRSA0001_2013/624-684
WYYVNGKGDLLL-GAQTID-NVKVYF-D-TK-GVQYKG-HFAPDH-----HY--YDKDTG---ALVTDRLVKD--GSKE-
>STRSA0001_2041/1248-1311
WAYYDGNGKRVT-GHQNIN-GQELFF-D-NN-GVQVKG-RTVNENGTI--RY--YDANSG---EMARNRFAEI--EPGV-
>STRSA0001_2041/1312-1374
WAYFNNDGAAVK-GSQNIN-GQNLYF-D-QN-GRQVKG-ALANVDGNL--RY--YDVNSG---ELYRNQFHEI---DGS-
>STRSA0001_2041/1375-1438
WYYFDGNGNAVK-GMVTIN-GQNLLF-D-NN-GKQIKG-HLVRVNGVV--RY--YDPNSG---EMAVNRWVEV--SPGW-
>NTL02SM0913|SMU_1005/1253-1317
WFLFDHNGVAVT-GTVTFN-GQRLYF-K-PN-GVQAKG-EFIRDADGHL-RY--YDPNSG---NEVRNRFVRN--SKGE-
>STRSA0001_1287/1244-1306
FRYFTNEGVMAK-GVTVID-GFTQYF-G-ED-GFQAKD-KLVTFKGKT--YY--FDAHTG---NAIKDTWRNI---NGK-
>STRSA0001_1287/1307-1370
WYHFDANGVAAT-GAQVIN-GQKLYF-N-ED-GSQVKG-GVVKNADG---TYSKYKEGSG---ELVTNEFFTT---DGN-
>STRSA0001_1287/1437-1501
WYYIGANGKSVT-GEVKIG-DDTYFF-A-KD-GKQVKG-QTVSAGNGRI-SY--YYGDSG---KRAVSTWIEI--QPGV-
>STRSA0001_2020/162-224
WYYLDNEGHKLT-GPQTID-SFNLYF-H-NN-GIQAKG-EKVTIDGKD--YY--YDKDNG---RKVTDTSIEV---DGK-
>STRSA0001_2020/258-321
WYYYTANGEKLT-GWQNVD-GVILYF-D-KD-GKQVKG-QEREIGGKY--YR--FDENDG---SLLTNQWHHT--SIFN-
>NTL02SM1912|SMU_2112/351-415
WFYMGADGIGVT-DWQKID-GMDYYF-E-PSSGIQVKG-DIAERDGKV--YY--LDEDSG---QVVKNRFGTT--PAER-
>NTL02LM1679|LEUM_1747/166-227
WYYYFDDGKNAK-GLSTID-NNIQYF-D-ES-GKQVKG-QYVTIDNQT--YY--FDKDSG---DELTGLQ-SI---DGN-
>NTL02LM1679|LEUM_1747/1193-1256
YYYFDKTGHLVT-GLQKIN-NHTYFF-L-PN-GIELVK-SFLQNEDGT--IV--YFDKKG---HQVFDQYITD--QNGN-
>NTL02LM1679|LEUM_1747/1258-1322
-YYFDDAGVMLKSGLATID-GHQQYF-D-QN-GVQVKD-KFVIGTDGYK-YY--FEPGSG---NLAILRYVQN--SKNQ-
>NTL02SM0699|SMU_772/160-223
WYYLGADGRNVT-GSHTIG-GKTMYF-A-QD-GKQVKG-AFAQDSDGNK-HY--YDRDSG---EMWTNRFVND---QGN-