HMM Seed Alignment: TIGR04239

Download Alignment

>gi|37524217|ref/3-273
RVIAISNPRLAQAFIDYMATHQVHLTMRPSHDGQHVELWLE-DDTKLTLVQQELEQFTRDPLNERYQAASWQSGDVN---
-HPLKYHNNL--NWQY-LSRQAGPLTLTILLLNIVVYLWMQFAGDYQ---VMSWLAW-PND---SQHMELWRWVTHGLLH
FSLLHIIFNLMWWWYLGGQTEKHLGTGKLFVIMIVSAVFSGWGQSLFSGSHFGGLSGVVYALIGYVWLTGERAPE-RGIG
VPRGLMAFSLFWLIVGYFDAFGLSIANAAHFSGLIIGLLMALWDNRH
>gi|261344537|ref/3-273
HIISFANPRMAQAFVDYMASQHIHLQIQPSSEQQQFEVWLA-DDQQVELVRKELEIFLQNPNDPRYLEASWQTGRTD---
-AQFQYRNYL--TFSY-LKQQSGPLTIAVILLSIIVYLWVTMADPRE---VLSYLGW-PIG---DQQSELWRWFSPALVH
FSISHIGFNLALWWFLAGQVEKKMGTGKLLTIFLVSALFSNWGQSLFSENNFGGLSGVVYALVSYVWITGERRPE-IGIG
IPRGLMVFSIVWLFFGYFDLLGMDIANAAHTSGLIIGLLMGVWDNRL
>gi|197286757|ref/3-273
HIITLSNPQLADMFVNYMATKGVRIHAKTENQQ--VSLWLE-NEQQLNQVESELKTFLREPFHPRYQAASWQTGTPQ---
RTGLQYRPAF--SIKS-MVQQSGPLTVLTIILCVLVFIWQQIVGDYN---VMLHLAW-PYD--ASLDFELWRYITPAFVH
FSLMHIAFNLAMWWYLASQTEKQLGTGKLFVIMLISALFSNWAQSLFAESNFGGLSGVVYALISYVGLTGLRAPE-KGIG
VPTGLIVFSILWIIAGYMGVLGDSIGNAAHFAGFLIGLLMALWDNRH
>gi|261823352|ref/4-272
RVIALSNPRLAQAFVDYMRTQQVHLDMRPQGHE--AELWLK-DETQLSKVQEALEIFLRDPTNPRYLAASWQTGSMD---
-TGIQYQRYP--FLQT-LQQKAGPLTLSVMVVTIAVFILMQISGYES---VMTWLAF-PAE---GQQVQLWRWFSHALLH
FSLLHILFNLMWWWYLGGPVEKVLGTGKLLVITLVSALVSGWAQSWFSGTYFGGLSGVVYALMGYVWLRGEREPD-GYLA
MPRSLMVFALLWLVAGYFDILGMSIANAAHVAGLIVGLLMAFWDTYN
>gi|148981497|ref/3-273
RLMVLDNPRLAQAFIDYMASRQIPIQMSPEGEGR-FALWLL-DGQFQVETEAELNRFLSEPNHKRYQAASWDMAETR---
KSHFHYHTPS--FMGM-IKAKAGPVTLSIMLVCVVIFALQQIGFGQA---IFNALHF-PAV--DGQQWQLWRWLSHAVLH
FSVMHIAFNILWWWQLGGDIEKKLGGLKLLQIFAVSSALSGAGQYWVEGANFGGLSGVVYALVGYLWVVGTKAPQ-LGLS
IPRQIVGFMLVWLVLGYMQPF-MAIANTAHLAGLVAGVIIGFVDSMK
>gi|260771647|ref/3-273
KLITLAHPRMAQAFIDYMASRHIEIQMQPEEGGQ-VSLWLI-DEQHQIETDSELQHFLRYPQDSKYQAASWQVANTQ---
PTPFTYQAPS--LLSL-VKGKAGPITLLVMMVCIGIFVLQQLGLARQ---VFAALHF-PAF--AGQQWQLWRWFSHALLH
FSIMHIAFNLLWWWQLGGDIEKRLGSLKLTQLALIAAALSGAGQYWVEGANFGGLSGVVYALVGYLWLLGWRAPQ-LGLE
MPKPLIGFMLIWLVLGFVQPF-MAIANTAHLVGLVSGMLLGLHDASR
>gi|197336375|ref/3-274
RLIALSNPRAGQAFIDYMASRHIDIRMMPEGDGQ-FALWVVSDDAYLLEVESELQAFLRNPNDVKYQSASWDMADTR---
TAKFAYGSPN--LIKM-IKAKAGIFTLSIMLVCIVIFALQQLGWNNS---IFQALHF-PAY--QGQSVEVWRWFSHALLH
FSATHIIFNLLWWWQLGGDIELRLGRTKLVQLFLFSALFSGLGQFWVEGANFGGLSGVVYALLGYSWFIGWLAPE-RGVS
VSKPIVGFMLVWLVLGYVQPF-MAIANTAHLAGLITGCVIAGIDSRF
>gi|54307378|ref/3-274
RLAGFHNPRQAQAFIDYMASRGITLSLASEPEGV-FAIWLV-DIEHQVEAESELNTFLSNPNESKYQAASWDVAESR---
TAKFNYRSPS--LMGM-IKSQAGPFSLSVMVVVIAIYVLWFFGLQQP---IFDLFHY-PFM--DGDQWQVWRFFSHALIH
FSALHIIFNCLWWWILGGQLERHSGSVKLVQVFLISALISGFAQFWLHGPNFGGLSGVVYALMGYIWWMGWLAPK-RGLT
MPKAYIGFMLAWLVIGFAEPMGMSIANMAHLFGLISGCLIALVDAKF
>gi|262273586|ref/3-274
RLTALSNPRAAQAFIDYMASRNIAIHMMPEGEGQ-FALWLA-DSQHQVEVEAELDTFLQNPMAERYQAASWEMAESR---
TAQFFYPRQG--LLAS-LKQNAGPFTLAVMVVCIVVFAGLTLGLGND---VFSLLHF-PAT--EAQQWQLWRLFSHALLH
FSATHIVFNLLWWWVLGGKIEQHSGSTKLMSLFLLTSLFSGLGQYVFDGPAFGGMSGVVYALLGYLWLMGALAPE-RGLS
IEPAYVGFMLLWLVVGFFEPFGMAIANMAHLFGLVSGCVLGFIDAKL
>gi|113972230|ref/3-276
EIGRLPNSRAAQAFVDYLKGEQIDCQIQPLPQG--VAILVI-RDQDAEQARKEFAHFIANPYDNKYLQASWEHGDTH---
-TKLDYGAPSLQLFAQ-FITGAGPVTLIIFGLCVLIYAAMNLGFGGP---VYETLSYFGAVP-DTSVSQFWRVFTPSLMH
FSAMHIIFNLLWWWYLGGKIETRIGTAPLLILLLVAGTLPNVVQYYVSGPNFGGLSGVVYAVAGYTWVMGIRKPA-AGIG
LPPSYMGFMLIWLMLGFTDFLGVSVANGAHIGGLLIGLAQGWFDSRS
>gi|119773237|ref/2-275
EFGRLPNARAAQALADYLKSRGIECLISPVAEG--VSLSVV-KPQDLAAAKAEFDYFLRHPGDDKYLAASWETGNTE---
-TQFNYGSPGLALLSR-FVTAAGPITLTVFAFCILVYTAFNLGFAEQ---TYSLLSFFGAHG-TDQSSEVWRIFTPTLMH
FSLMHISFNLLWWWYLGGKIETRIGSWPLMTLLLVAGTLPNLIQYYVSGPNFGGLSGVVYAVAGYTFVMGIRKPS-AGIY
LPPSYMGFMLVWLILGFFDVLGLSMANGAHLGGLAVGLLQGLWDSRR
>gi|91794965|ref/3-276
AIGQLDNARAAQAFIDYLRGIGIDCEPVSNEQG--VMLVIH-NAEQQAQAKAEFERFLAEPYADRYLKASWDSGDTK---
-AQLDYGAAGLGLVQH-FITQSGPLTLGVFAISLLLFALMNFGLLEL---VYTSLSFFGATQ-AIDLTQVWRVFTPSLLH
FSLLHIMFNLLWWWYLGGKIELRLGAPKLLVLLLVAGTLPNILQYFISGPNFGGLSGVVYALVGYTWLMGKRRPQ-SGLQ
LPDSYMGFMMLWLVLGFTDLLGMPIANGAHLGGLLIGLTQAAFDSRK
>gi|145301118|ref/3-274
QLLVLDNARMAQALVDYLATLGISCELTQSELG--VSVWLA-DEQRLAQAQLEVKRFLADPSHPRYMEASWQSGQAD---
-ARIDYSKGMTDPVTD-FLHQAGPLTLVVIIACLAIYALDAIGL--P---IFDELAFYPTLA-QFTDWQAWRYFTPAFIH
FSILHLVFNLLWWWYLGGQIEQRLGGGKLLVLLLVGAALPNIAEFFVSGPLFGGLSGVVYALLGYCWLRNKLQPA-CGLT
LPPALMGFMLFWLVLGFFDMLGTSTANMAHLVGLLVGLIQGWLDRHH
>gi|237806919|ref/3-270
QLIQLNDPHLAQMLADYLQTQNMPCQVQSSETG--ISVWLL-DETKTSAAEREVQRFILEPHHPRYREAAWQQEKPA--T
W--RSATDSS--LMTE-LMLQAQPLMLVVSFLMIAVFLLYWLTIPVE---SLLTFEW------PWQRGQIWRLFTPVFLH
FSVLHLVFNLAWWWYLGGRTEQRYGVIKLAIVLISGALIPNVLQAMVSGSLFGGMSGVTYALLGYLWLRERNSEDPSQVT
VSNGLFIFMLVWLVLGFTNLLGFNTANLAHLGGLLVGLIQGWRDSHR
>gi|149908613|ref/3-278
EIGVINNPRMAQAFVDYLAVQKIDAKVAQTDDG--FAICLP-AMTHVEVASQELDLFLADPYQDKYQAASWDVADTR---
TANFSYGSGN--MLSN-FLMHAGKVTLTIFALSVTVFVAMYFSMLTQNEFIYAALHF-PFELSASSLSEVWRLFTPAIMH
FSVLHLVFNLLWWWYLGGQIENKLGSKKLLLLFLVAALIPNIGQFLLSGPNFGGLSGVVYALVGYIWWTGWLAPA-QGIH
LPKPYVGFMLVWLVLGFFPIFGLNVANAAHVLGLMVGCGQAFLDHKF
>gi|119947069|ref/3-276
LLHQFQNERAAQAFSDYLSAIGIKNNLHHDDFS--YQLLIE-QKEQQTQAEIELDLFLQHPNDPKYMSASWQTGEVS-SE
NNYFAFADSN--LVSN-FIHHAGLVTHSIFAVCLVIYLLIASGVFQP---IPSVLSFFSQQ--PFDYLQSWRFITPALLH
FSALHIIFNLLWWWQLAGLVEKQQGKMHLLVLFLFSGIAANLAQYFLVSPYFGGLSGVVYGLVGYCWLFGKLNKS-SQVM
LPDAYFVFLLAWLVLGFVDLLPVNIANYAHLVGLLAGLLMAVLTSKL
>gi|90408718|ref/3-276
RLYYFQNLRIAQAFSDHLNTLDIDNKIESDEFN--YVLILL-KSDQQEQAQHELDAFLENPNADKYLSASWSTGSTK--Q
VRNSAYDTHE--NLLNNFIAHAGILTHSVLGLCVFVFILMNIGFSES---TFRALAFFVNQ--PFDLSQSWRFISPAFLH
FSLLHIVFNLLWWWQLAGVIEKQQGSARLLILFVFSAIASNLAQYFLVSPYFGGLSGVVYTLVGYCWLSGRLDKS-SLVN
LPQSYFLFLLFWLALGFVDILPVNVANYAHLVGLLAGLIMAILCHYL
>gi|71281635|ref/6-281
PLVQLKDHNIALLFSNYLQSLGIQAQLKSSQED--GHVILC-PEDKIAQAKVEFDAFILKPYDDKYQQAAWDRGETVTLN
SGDFSLLSS---FKDS-FIAHAGIVTLLVFALCWLVFIFSELGWAQQ---IFYALQFYPQLSIDALLADPVRLIGPAFFH
FSWLHIVFNTMWWWQLGGSIEKILGKSTLINLLLLSAIVSNVGQYLVSGSNFGGLSGVVYALVGFVWWFGYLAPD-RGLF
LAKPLVGFLLFWLVLGFADLLPVNVANTAHLLGLLSGCFLAVFTVKV
>gi|77361236|ref/3-268
ELGSLNNPRAAQGFIDYLKSQGLQGELRSTDGS--TVIISV-LPEHFHQVQPLWAEFTQNPNHARYQQASWEVGSTQ---
-SPLKYQGQSLNLVAR-FKALS-WLNQTVSILSIVIYIAFLLGGFET---IYTTLQFNPAE--PLT------WITPAIVH
FSAMHIVFNLVWWVSLGDNIEKQCGKLSLIGLFVVSALISNWAQYLMVGPNFGGLSGVVYALLGFCWIHSALNPK-QPAL
VSTAIIGFMLIWLVLGFADVLFIGMANWAHLGGLISGMAYAVTTSIL
>gi|88858448|ref/3-268
LLAELTNPRAAQAFFDYLKTQHITAKLMPKSAQR-VEIWV--DEAHHAKADVLWHEFEQDSSADKYWSASWDVGTTD---
-SGLAYQGASFDLKAR-FDALS-WLNRSVSLVSVGLYLAFMFGGFNG---LFSVLKFNPAN--PLQ------WFTPAIIH
FSAIHLIFNLMWWMSLGSKIEQALSSRHLVFLFLFTALISNWAQFLLVGDNFGGLSGVVYGLLGFCWIYGYYSKN-EQLA
VSQPIVGFMLVWLALGFADVLFVSMANWAHLFGLIAGCVAGWALAWQ
>gi|283835815|ref/3-271
MITSFANPRVAQAFVDYMATQGVILTIQQHQQ---TDVWLA-DESQAERVRAELARFLDNPGDPRYLAASWQSGHTD---
-SGLRYQRYP--FLAT-LRERAGPVTWVVMAACILVFIAMNVVGDQA---VMLWLAW-PFD--PSLKFEFWRYFTHAFMH
FSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITVISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQ-SGIF
LQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFADTMN
>gi|156936417|ref/3-271
MINSFDNPRLAQAFVDYMATQGVILEIQRHDT---WDIWLA-DEAQAERVKAELSYFLAHPGDPRYLSASWQTGQLN---
-AGLRYRSYP--FMAS-VRAHAGPLTLGMMALCVVAYLAMSIIGSPQ---VAVWLAW-PFD--PSLKFQLWRYVSPLLLH
FSLLSLIFNLLWWWYLAGPLERSVGSGKLLTLTLVTALVGGVIQYQIAGPWFGGLGGVVYALVGYVWLRGEREPE-SGLY
LPRGILVFMLLWLAIGGLGLFGNKTANADLVAGMLIGLAMAMTDTLH
>gi|85060305|ref/3-274
RVTALSNARLALAFIDYMKTQGVDMELRPQGRY--AELWLA-QDEKLAQVESALEAFLLDPQHPRYQAASWRTGSLHYRG
ETGAGLRG----WLPA-LRQQAGPLTLGVTALCVLVFFLMALIGDDR---VMAALLY-PAG--PAQYGQIWRWVSHAFLH
FSLLHLLFNVVWWWYLAGLTERYRGRASLAILFVLSAVVSGMVQSHFSGIFFGGLSGVVYALMGYVWWHGEKNPG-GPLF
MPLGVIVFALLWLIAGYFNILGIAIANAAHVAGLVTGLLMAFWQTRR
>gi|238921529|ref/1-269
-MITLPNPRLAQAFIDYMATQGVRLEAESGSQG--VALWLA-DDSRLAQVEQELQRFLQAPQHPRYQAASWQSGSTH---
-SGLRYARFG--YLRS-FARQSGPLTIGVTLLCILVYLLQLALGDGA---VMAYLAW-PAD--AAQHYQLWRYFTPALLH
FSPLHIIFNLMWWWYLGGQVEKRLGAAKLAQIALVSALMSAWAQSLFSGIFFGGLSGVVYALMGYVWWCGERAPQ-FGVA
MPRGLMLFSLLWLVAGYFNWFGLAIANAAHAGGLVIGLLMAFWDMRH