HMM Seed Alignment: TIGR04315

Download Alignment

>gi|114045949|ref|YP_736499.1|/20-446
NPHKD--VLKGPFATGSEVTTQCLTCHEEQATDMMKTSHWTWELEQ-KLPD-RTVLR--GKKNS-INNFCVSISS-----
NEPRCTSCHAGYGWKDSN----FDFKDKTKVDCLVCHDTTGTY--VKDPAGAGEPM---AKL----------------DL
AKIAQNVGEPVRDNCGSCHFYGGGGDAVKHGDLDSSMAYPDKATDVHMD---SDGNNFQCQNCHTTEK-HQISGNAMGVS
PGGI-------------DHIGCENCHE--SAPH--S---NKKLNTHTATVACQTCHIPFFAKNE-PTKMHWDWSTAGD--
-------DKPETVDQYGKHTYQKKKGDFVWEKMVKPQYAWYNGTANA-YMAGDKM-DPK--VVTKLTYPMGDINDAKAKI
YPFKVHTGKQIYDKKLNIFITPKTYGKG----GYWSEFDWNLAAKLGMEANTTMTEKGIKYSGEYGFAATEMWWRINHMV
SPKEQALNCNDCHN--KG-TR--LDWQALGY
>gi|373459560|ref|ZP_09551327.1/19-436
EDHSSY--IKGPFKNPQEVTKQCLTCHEESAQQIMKTSHWTWSTPPVKVPG-HEGLHRIGKKDI-FNNYCIHVQS-----
NWPRCTSCHTGYGWKDDS----FDFDKEENVDCLICHADPKIY--KKNPAGAGFPK---KDV----------------DL
LKAARSVRLPDRENCGSCHFYGGGGENVKHGDLEQILANPTRDQDVHMG------SGMVCQDCHVHEN-HDFKGRGSSVS
VLDE-------------NHLYCADCHG--LDAH--E---NERLNLHVRSIACQTCHIPTFAKGM-ATKIWWDWSKAGM--
--------DIEPKEEYGRETFNKKKGEFHWAKNVRPEYAWYNGTMDR-YLKGDKL-DPA--NILYLNRPRGSVYDNKAKI
YPFKVMRGKQIYDAEYNYLIIPNLWG------GYWKHFNWDKAAKDGMAA------AGLPYSGHYAFVETKMYWRINHEV
VPKEKALQCVDCHG--KN-SI--LDWEKLGY
>gi|189424778|ref|YP_001951955./25-454
GNHADY-VGAGPFKTGPEVTKKCMECHEAETKSFMKSVHWTWAKKQ-KING-KEMEY--GKKNA-LNNFCVAIDS-----
NWPRCTSCHAGYGWKDKS----FDFNKAENVDCLVCHETTGTY--KKTPAGAGNPD---AKV----------------DL
AKVAQSVGKPTRAACGSCHFYGGGGDRVKHGDLDSSLAKPTADIDVHMG----GKAQMTCQSCHKGGKDHAIKGEAIAVS
VGAG------------PRIMGCTDCHK--KNVH--K---NAFLNKHAKKVACQTCHIPTFAKAK-PTKTWWDWSTAGKNI
P------EKDIPKDAYGEKTYAKMKGDFKWEKDVVPTYAWYNGTVER-VLLGDKI-DPS--KVVKLSAAKGDRNDPNAKI
MPFKIMRGKQPYDSVNNTVAVVNTFGPPTSETAYWVKYDWNKAIEAGMKA------AGQPYSGKYGFIETSMVWAVNHMV
APKDKALKCNDCHG--DK-GR--LDWKALGY
>gi|322421074|ref|YP_004200297./25-465
VDHSEF--VKGPFKSGTEVTKVCLECHEGQAADFMKTTHWTWAGTPNMVKGMEKSTKKYGKSNM-INSFCTSIQGGKDGV
VHESCGKCHAGYGWTRTN----FDFTDKTKVDCLVCHAQKGNY--TRAAVGCDIDN---KSIEKKSM-----------DL
NVAAQSVGLPGRKNCGSCHFYGGGGDAVKNAGLDSTLEKPKKSQDVHMGTKESGGQDMACQSCHVTRN-HKIGGASSMMA
HYDT--------------RVNCEQCHSGAKAPHQ-KAKNGALINKHLATVACQTCHIPFFAKGQ-ATKMAWKWSDVGK--
--------NITAEEQFDKETYAKHKGTFVWGMNVKPVYAWSNGMVER-YMVGDKVKDPS--KPVMMMRPAGDIKDQKAKI
YPYKLYKGDQPMDAKYKNLIIFQQYK------SLWLDYDWDKACRLGAEG------CGLPYSGKYQFVNTEAYIAAQHEV
SPKEEALQCGECHM--GG-NR--LDWKALGY
>gi|322420347|ref|YP_004199570./24-462
TDHSQ--LVKGPFKTGQEVTKACLACHEKEAADFIKTPHWTWKGPPRLVKGLEKSREEMGKINL-INNFAISVQGGAGWA
NIEACAKCHAGYGMTGSS----FDFSDKTRIDCLVCHVKEGAY--KKVSGGM-VDA---KAIVHGYL-----------NL
EKAAQGVGAPGRSNCGTCHFFSGGEDGSKNGDLSSALIKTTRTNDVHMGSKASGGQDLACQGCHRTRA-HRIAGASTFLA
TFDG--------------RVNCEDCHAGKTAPHR-KSPDGTMIDRHLASVACQTCHIPVFAKEQ-ATKMSWDWSTVGK--
--------DIEPGEQFDKETYDKGKGTFVWNKNVVPTYAWFNGTVEK-YLKGQKV-AGA--EPLEISKPAGDITDKTARI
FPFKVLAGNQPMDSVNKYLLIPQTHG------ELFDHYDWQQALTEGSKG------SGLPYSGKFRFVKTVSYGSINHEV
APRENALRCNACHD--GG-KR--LDWKSLGY
>gi|317052233|ref|YP_004113349./25-457
LDHSMF--IQGEFKSGPEVTKKCLECHSQQGRDFMQTAHWKWAGKPNHVKGMESSKEEYGKRNM-INNFCISVEGGTNPQ
NMASCTGCHAGYGWRDSS----FDHSNPVNIDCLVCHTSEGDYFGAKRSGGAGTVS---KAYVESG------------GL
LKAAQSVGKPSMINCGTCHFYGGGGDAVKHGGLDSSLYTANRSLDVHMS----APANMTCVDCHTADK-HRVKGASTMMA
THEG--------------RVSCSDCHA---DVH--KS--NPLMAKHLDAIACQTCHIPAHSRGQ-HSKVLWDWSTSGKK-
-------KDPEWEGDHDRETYYPTKGTFEWGKDVMPAYLWYNGQIER-YMKGDKI-DPK--QMTSINKPVGDIKDKKAKI
YPFKEHLGNQPYDTRHLYLLTPHTFQ------GYWSHLDWQKALVEGAKG------AGMEYSGSFDFARTIEYISVSHQV
APKEQALKCADCHS--PQ-GR--LDWKALGY
>gi|88707007|ref|ZP_01104704.1|/48-465
VEHTA--LLDQSFASPQAVTARCLECHDGVDQDLRHSSHWTWDRPPVAVAG-RSEPVSGGKRNV-INNFCIGIQG-----
NWASCTACHAGYGWTDAS----YDFDATENIDCLVCHDGSGTY--VK--GNAGLPV---DGV----------------DL
REVAMSVGKPGRNNCGSCHFNGGGGDAVKHGDLDSSLFYPSENVDVHMG-----RFDFVCTDCHRTRD-HQIAGRSTSVS
MDNE-------------NQIHCTDCHD--RAPH--R---ERRLNSHGGALACQTCHIPETARRR-ATKTHWDWSTAGD--
-----------ESREEDDHQYLRIKGSFAYEQQLKPSYMWFNGKASR-YILGDPI-DPN--EVTALNAPLGSIEDPEARI
WPFKVHRASQVYDRLNRYLLQPETSGPR----GFWKNFDWDRALRSGSQH------TGLAYSGDYGFTDTSMYWPQTHMV
APKEQALQCIDCHGEEGK-GR--LDWQSLGY
>gi|375105995|ref|ZP_09752256.1/57-480
VDHHD--IVKGPFKSGQDVTRACIACHKDAAADMMKTTHWTWESKAVSVPW-RKTPVTIGKINQ-INNFCIGTQG-----
NENKCMACHIGYGWEAGKA---AQQADPANVDCLACHADPSRY--GK--GLWGNPT---PSV----------------DL
LAAAQSVRATTRENCGKCHFDGGGGNGVKHGDLDESLYFPQRTLDVHMG----GKHKLQCSDCHVTKR-HQILGRMIADN
YT-----------IDPVEQVTCTQCHE--GKFH--R---DERIGTHLRSLACQTCHIPAMAREE-PTKVAWDWSKAGQ--
-----------KDRADDHYTYLKIKGEFSYRSNFAPAYLWFNGSNDYRYLLGDPI-AKD--GTTYINKPAGSITDPKARI
FPFKVHVAKQPYDTVKGYLLQPVTAGKN----GYWTHFDWHQAFRLAEPI------TGLSYSGQYGFTETTMYWPTTHMV
QSADQALQCDDCHSATGKPGR--MDWKALGY
>gi|374585763|ref|ZP_09658855.1/49-481
VDHSKFPQLQRAFAAPQEITAACIGCHNERHKEVMASSHWNWGREE-YVAG-KGIRFV-GKKNI-LNNFCIGIQT-----
NEESCNKCHTGYGWRDDK----FNFNDPRNVDCLACHDNSNTY--VKASGGAGMPD---PSV----------------NL
NVVAQSVGRPERANCGTCHFFGGGGNNVKHGDLDSSLFDPTRAVDVHMA---SEGANLQCVDCHVTEN-HKMKGKVYSLS
SMNR-------------DRSTCESCHT--ETPH--E---SDVINEHTLKVACQSCHIPVYAKVN-PTKLSWDWSTAGKLK
DG-----KPYTEHAEDGTDSYMSIKGSFTWGKEIEPEYVWFNGTASH-YLVGDKI-DPD--SVVKVNELHGSYDDPDAKI
IPVKIHRGNQIYDKEHLYLIQPKTYSGHSGDGGFWKEFNWNRAAELGMKD------IGLPYSGQYGFVKTEMYWPINHMV
STKEKTVNCTECHT--RDNSR--LQHLTDFY
>gi|256829176|ref|YP_003157904./52-499
TDHSQHPILKQQFSSPEEVTKACLTCHNQAAMQLHKTIHWTWKDPA-DPSG-ET-----GKGGLSVNNFCISVGS-----
NEPRCTSCHIGYGWKDKN----FDFSKAEKVDCLVCHEQTGTY--EKFPTKSGYPV---TNATMFEGKIEFLPP----DY
NAVAQSVGRPGRDNCGTCHFYGGGGDAVKHGDLDSSMAMPSKQLDVHMG---TDGQNFDCSRCHTTNA-HNIAGRIYATP
ASTERKSLLE---DDLTPKIMCESCHG--AQPH--KT--NQKANDHTDKVSCQACHIPTYARIN-ATKMHWDWSTAGDK-
-------KREVKKDEFGKADYDAKKGSFVWQKNVVPRYEWFNGSIRG-TTAKDVI-DPS--STVRVSWPIGGIGDPNSRI
FPFKVHTGKTPYDKVNKTMVIPKLFGPK-GSGAYWAEFDWNKAIAIGQEY------NGLPYSGEYDFVDTEYVFPITHMV
APKEQAVACVECHA--KG-GR--LDHLEGFY
>gi|258404305|ref|YP_003197047./59-509
ADHSKHKILQKDFESGPEVTEACLTCHNEAALQFHETIHWTWICPA--DPN-KEM----GKNGVSMNNFXMSIKS-----
NEARCTSCHAGYGWEDKN----FDFTSEKNVDCLVCHEQTGTY--KKFPTGAGHPV----SEPKKFGGKMFYPP----NW
NKVAQSVGRPDRKNCGTCHFYGGGGDGVKHGDLDSSLYNPSQQLDVHMS---EEGGDFTCVRCHTTEA-HSIAGRCYKKP
AYEERKSLID---DDQIKRISCVSCHT--TTPH--KP--GHKANDHTDMVACQSCHIPEFARVN-PTKMWWDWSKAGR-L
NEKG---KPILTEGKYGKHSYHGKKGEFRWEKNVVPEYDWFNGSLEY-QLFTEKF-DPA-NAPIELNKVQGSREDPRALI
YPFKIHRAKQPYDTKLNKFVNVHLFGKDKN--AYWKSYDWQRAITAGMDY------MGLPYSGEFDFIETEYHFPITHMV
APKEDSLACNQCHA--DN-AR--LAQLTGFY
>gi|119357896|ref|YP_912540.1|/39-490
TDHKKFKILQQDFKSGPEVTKACLTCHTEASKQLHRTRHWTWDVP--MKKG-ERL----GKKNV-VNNFCISVEG-----
NEPRCTSCHIGYDWKDKN----FNFKSEENVDCLACHDMTGTY--KKLPAGAGHPA-YFDTVFEKKLYPKV-------NL
SYVAQRVGQPDRHNCGICHFEGGGADAVKHGDLDNSLLKPDRELDVHMAI-GKKDLNMTCADCHKTEG-HQVPGSRYTPE
AHDTHGFDYP---LTDNNPATCSSCHG--LKPH--KK--LKKLNDHVARVACQTCHIPFIAKQR-PTKMWWDWSKAGK-F
DKNG---KEITIKDSSGCVLYVSKKGAFRWAKNVAPEYRWFNGEMNY-TTFNTQI-NDR--KVVSVNHPDGAANDTLSRI
WPFKVHRGMQPYDPVLKRFVKPIVYGPK-GSGAYWSDFNWDKSIRKGMEN------AGLEYSGKYAFVETEMYWPISHMV
SPKEKSLSCKECHS--RN-GR--LQNLSGFY
>gi|89902397|ref|YP_524868.1|/41-496
ADHSKFKILDQDFASGPEVTKACLSCHTEAAKQIHQTQHWKWEFIN-PDTK-QVL----GKKHV-VNNFCTSVRS-----
NEAACNSCHIGYGWKDAK----FDFTVEENVDCLACHDHTGKY--TKPSGFAGNPV-ARDTEFPAGSGKIIKGI----NL
KEIAQKVGPTTRNTCGACHFKGGGGDGVKHGDLDSSLENPDKALDVHMD---TKGLNFSCATCHKTDD-HKVSGSRYAPT
AKDKAPAHMRG-EADKTSPDTCQACHG--QAPH--Q---IVRLNEHTAKIACQTCHIPAFARGGVPTKMSWDWSTAGK-L
DKDG---KFQTIRDENDYDTYMTIKGDFKWAENVTPEYVWFNGTNKY-TLITDKI-EKG-DKPVQINGFEGSATDGKSMI
WPIKLFRGKQQYDPINKSLVITHLAGND-DT-AFWKNLDWVKAVTEGMAK------GGVKFSGKVDFIETESMWAINHMV
APKEKALGCVACHA--KV-GR--LDKIDGVY
>gi|296137067|ref|YP_003644309./72-536
ADHSKFKELQGPFKSGSEVTAACLSCHTEAAKQIKGTIHWKWEEVE-QDSK-RIV----GKNKV-MNNFCVSTPS-----
NQQFCTGCHVGYGDAKSGEFVAFSKRPDTDVDCLVCHDQTGKY--VKAPYQSGNPP-TTRIEMPPGSGKFIEPI----DL
ALIAQHVGAPSRANCGTCHFNGGGGDGVKHGDLDSSLINPPKSLDVHMA---KDGLNFQCQTCHATGG-HEVSGSHYKLD
AKHEGGQYVRGSQHNMGSAASCQSCHG--DTPH--KGSLAQDLNMHTRNIACQTCHIPEFARGGVPTKMEWDYSKAGQ-R
GPDG---KPLVIKDEHGHPTYLGIKGQFKLGENVVPDYTWFNGAVKW-MNIGEKV-TPNKDGVVAINQYGGSATDGKSRI
WPVKTMKGTQPYDPEMHRLLAIHNAGFD-DA-AYWHTMDWQKSIAVGMKE------AGLEWSGKYEFVKTTTTWPITHMV
APKDKALSCAQCHS--NN-GR--LEKIDGIY
>gi|144899251|emb|CAM76115.1|/31-483
ADHSKFEALKGPFASAPEVTKACLACHTEASHQVMKSIHWSWDFTN-PDSG-KRL----GKPRT-MNSFCGSPLS-----
NEPRCTSCHAGYGWTDARK---QPEPVQENVDCLVCHDRSGGY--KKVATDAGHPL-YEPRTM---GGKTVMPP----DL
AKAARSVGDPGRDNCGACHFNGGGGDAVKHGDLDTSLIKPSRKLDVHMA---ADGANMTCATCHTFND-HIPSGSRYDTT
AKDPHGLDLP---KDDHNRATCESCHG--DTPH--R---ETKLNDHTDRVACQTCHIPEFARGGIATKTLWDWSTAGR-K
DESG---KPIFLKDDHGHLKYSAEKGDFEYGENVRPTYHWFNGVTDQ-VNLTDKI-DDG--GILRLNTLHGDAKDPKARI
WPFKEMRGKQPYDPELKTLVVNHVFGSD-DS-AFWTNFDYPKAIKFGMDY------AGLPWSGKIGFIETRMTWPITHMV
APKEDAVKCGQCHTRGED-GR--LAALTDFY
>gi|381337791|emb|CCG93838.1|/48-503
ADHSKFKALQGPFDRAEDVTAACLTCHTEAGEQIRQTTHWTWLYEH-DETG-QTL----GKSKV-INSFCGMTIT-----
NEPRCTSCHVGYGWNDMRE---PPPQAENAVDCLVCHDTTGEY--WKFPTLAGHPT-YIPREWPKGSGKMVQPP----DL
ERIARNVGASGRANCGSCHFHGGGADGVKHGDLDTSLINPPKSLDVHMS---PEGLNFGCSDCHTTMG-HAVSGSRYQAN
ARDTLGIDVPG--HTDFSRASCESCHG--LAPH--D---KPKLNDHVDKLACQTCHIPAFARGGVPTKTWWDWSTAGR-L
DENG---QPIKELDDHGHPSYLSEKGDFRHGENVVPEYAWFDGTVQY-TLAGDPL-DIE-NPPVAINRVEGRPDDGESRI
WPFKVMRGKQPFDTERRTLLATHVFGAD-DT-SLWSNFSWEKALQAASDL------SGMPYSGEFSFIETTMHWPITHMV
APADQAVKCGSCHK--AE-SR--LAGLGGIY
>gi|117924185|ref|YP_864802.1|/41-500
ANHSKFKQLEGPFNSGPEVTKACLGCHTEAAKQVMKTKHWTWESKQ-ADTG-QML----GKKHV-VNSFCGTPKS-----
NWAACTACHAGYGWQDND----FDFTKQENVDCLVCHDHSGQY--EKSVGGAGHPKGFESPEHKKYLDDQAKAPRDAVDL
VAAAQSVGRPSRRNCGSCHFVGGGDDGVKHGDMDTSLIEPDEFLDVHMD---VNGKNFSCTACHRTHG-HVIPGSRYKST
AKDTKGVETP---SEAHSRTSCESCHGSEVKKH------SAKLNDHVDKVACQTCHIPKIARGGVKTKMVWDWSTAGK-L
DENG---KPISERNSAGEITYSSKKGHFEWAEDVQPEYRWFDGQVRY-TLFGDKV-DDS--KPVQINGIHGSYTDNQSRI
WPFKIMKGKQVYDPVEKHLLVMHTYGDD-DS-SFWSNFDWKKSLEAGAKE-----PEAPPFNGQYAFVNTEMYWPITHMV
APASDALKCKACHV--QE-GR--LAALTDFY
>gi|121996958|ref|YP_001001745./43-503
ADHSQFSILEGPFETGPEVTEACLQCHTEAAKQVHSSIHWTWTYEQ-PETE-QTL----GKRYV-LNNLCMGIAG-----
SYERCSSCHVGYGWEDRD----FDFTAEEKVDCLVCHDTTGDY--VKFPTAAGHPP-YEDTEF---RGTLFEAP----DL
AHVARNVGDTSRATCGSCHFEGGGGNAVKHGDLDSSLLDPPRSVDVHMT---PDGADFSCSNCHEFTG-HIQSGSRYHLT
MPDTDDAPVP---ARPQDKPACVACHG--SEPH--EGRIHDKLNAHGEFIACQTCHVPEIARGGYPTKTLWDWSEAGR-L
DDDG---QPIVEKDDEGRVVYDGMKGVFEWDEDYPPDYRWFDGNMVY-TLPDDTI-DPD--DEVPVNRPQGQPGEEGAKI
WPFKIMYGQQLYDAEHHTLLVPQLFGKEGDENAYWQNYDWDRAIEAGMEEARAVGQTEMVYSGEYGFVETRMYWPVNHMV
APAEESVACVDCHS--RD-GR--MAGLDGVY
>gi|344344399|ref|ZP_08775262.1/53-509
ADHAKFEILQQAFESGPEVTEACLSCHTETGEHFMRNVHWTWDYVD-PDTG-QQL----GKRHL-INNFCTNARG-----
NEGMCAQCHAGYGWKDED----FDFTDQTKIDCLVCHDGTGTY--YKTPNNEGHSA---CSVMFEDLEPL--------DL
GEIARNVALPSRENCGTCHFNGGGGDNVKHGDLSTALIDPPHELDVHMD---AAGLNFSCTACHITKQ-HVWAGSRYKIV
SRDTEGTGQP---GERRDVATCESCHG--LSPHPIDSLRALKLNDHVASVACQTCHIPEFARGGVATITDWDWRTAGRTR
DGEGYHEHGYTQGNGEHRYTYKSIKGDFVYDEDIVPEYAWFDGQMHY-TTIDTKF-DDS-QQPIEINGFEGNREDGNSRI
WPFKRMVTWLPYDAGNGTLVYTHLWGID-DT-AYWGNYDMGRAIARGMAD------FGLDYSGEFGFVETLSWWPITHMV
APKEDALACRDCHA--AE-GR--LAGLEGVY
>gi|51245838|ref|YP_065722.1|/37-481
PEHQS---IMDPFASPQDVTRVCIGCHQTQATDLWHSRHYRWQGEEVEFHG-KKQRL--GKKNL-LNNFCINIIS-----
NEPRCTSCHVGYGWSDGS----FAF-KEEDMDCLACHDSTGNY--KKFPTAAGYPV-YQKEQKVFAGKVVFKKV----VL
LKSARSATKPLSQNCGACHFYGGGGHAVKPGDLDRSVLEGDPAIDIHMNN-PDLEKRLVCVDCHADPNKHDIRGALQASM
ATGS-------------NHFSCRDCHG--RAAH--SKRMKSTLNRHTSTVACQTCHIPYYAKKY-PTKIWWDWSTAGDK-
-------KRTVKKDAYENPDYSWKKGDFRWDKALRPEYYWYNGKTDY-VLLGEKI-DTT--KILVFNPLEGSFADKTALI
SPFKVMRGKQFYDKKQNIVLVPKLFGKN----GYWKSLNWQKSFSLGMEA------AGLSFSGEAGVIETRMFWPIDHMV
SPASQAVGCIECHTKDPE-QKPLLDWQKLGY