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About

Biographies

Jason Rafe Miller
Assistant Professor

Research Interests and Accomplishments

Jason Rafe Miller works to improve and extend software for DNA sequence assembly. He is the Principal Investigator of the Celera Assembler software development project. His group works on metagenomics assembly, large genome assembly, and assembly of next generation sequencing data. He has contributed to assembly infrastructure development at TIGR, genome comparison and annotation software at Celera, and annotation visualization software at GlaxoSmithKline and SmithKline Beecham. Mr. Miller received his Master's degree from the University of Pennsylvania and his Bachelor's degree from New York University.

Select Publications

Koren, S., Miller, J. R., et al.
An Algorithm for Automated Closure During Assembly

BMC Bioinformatics. 2010 Sep 10; 11: 457.[more]

Miller, J. R., Koren, S., et al.
Assembly Algorithms for Next-generation Sequencing Data

Genomics. 2010 Mar 06; 95(6): 315-27.[more]

Miller, J. R., Delcher, A. L., et al.
Aggressive Assembly of Pyrosequencing Reads With Mates

Bioinformatics. 2008 Oct 28; 24(24): 2818-24.[more]

Denisov, G., Walenz, B., et al.
Consensus Generation and Variant Detection by Celera Assembler

Bioinformatics. 2008 Apr 15; 24(8): 1035-40.[more]

Florea, L., Di Francesco, V., et al.
Gene and Alternative Splicing Annotation With AIR

Genome Res. 2005 Jan 01; 15(1): 54-66.[more]

Shatkay, H., Miller, J., et al.
ThurGood: Evaluating Assembly-to-assembly Mapping

J Comput Biol. 2004 May 01; 11(5): 800-11.[more]

Istrail, S., Sutton, G. G., et al.
Whole-genome Shotgun Assembly and Comparison of Human Genome Assemblies

Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 1916-21.[more]