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Biographies
Research Interests and Accomplishments
Ramana Madupu is a Bioinformatics Analyst in the Prokaryotic Annotation Group at the J. Craig Venter Institute (JCVI). She has worked on several microbial genome sequencing projects and has extensive experience in structural and functional annotation of genome sequences, comparative genome analysis, and project management. Her research interests include genome annotation, process design and development of annotation pipelines, tool development for genome analysis, and improving microbial gene annotation methods.
Prior to joining JCVI in 2001, she was a post doctoral fellow at the National Eye Institute, NIH where she studied the genetics of retinal diseases. She received her B.S. degree in Genetics and Ph.D. degree in Microbiology from Osmania University, India.
Select Publications
Salzberg, S. L., Sommer, D. D., et al.
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
BMC Genomics. 2008 May 01; 9(1): 204.
Angiuoli, S. V., Gussman, A., et al.
Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
Omics. 2008 Apr 16; 12(2): 137-41.
Myers, G. S., Parker, D., et al.
Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus
Nat Biotechnol. 2007 Apr 29;
Seshadri, R., Joseph, S. W., et al.
Genome Sequence of Aeromonas hydrophila ATCC 7966T: The Jack of All Trades
J Bacteriol. 2006 Sep 15; 188: 8272-8282.
Dunning Hotopp, J. C., Lin, M., et al.
Comparative Genomics of Emerging Human Ehrlichiosis Agents
PLoS Genet. 2006 Feb 17; 2(2): e21.
Wu, M., Ren, Q., et al.
Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901
PLoS Genet. 2005 Nov 25; 1(5): e65.
Methe, B. A., Nelson, K. E., et al.
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
Proc Natl Acad Sci U S A. 2005 Jul 25; 102(31): 10913-8.