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About

Biographies

Yanbao Yu, Ph.D.
Staff Scientist

Research Interests and Accomplishments

Yanbao Yu jointed the J. Craig Venter Institute as a postdoctoral fellow in May 2013, with a focus on mass spectrometry-based bioanalytical method development for high throughput protein identification and quantitation. He has been a Staff Scientist since February 2014, with expanded research interests in human microbiome, metaproteomics, inflammatory diseases and host-pathogen interactions. He earned his Ph.D in chemical biology from Fudan University in China in 2009. Before joining JCVI, he was a research scholar (2007-2009) and postdoctoral research associate (2009-2013) in the Department of Biochemistry and Biophysics at the University of North Carolina at Chapel Hill.

Select Publications

Yan J, Yan F, et al.
The 3M Complex Maintains Microtubule and Genome Integrity.

Molecular Cell. 2014 Apr 30;[more]

Lane KR, Yu Y, et al.
Cell Cycle-regulated Protein Abundance Changes in Synchronously Proliferating HeLa Cells Include Regulation of Pre-mRNA Splicing Proteins.

PloS One. 2013 May 01; 8: e58456.[more]

Khatun J, Yu Y, et al.
Whole Human Genome Proteogenomic Mapping for ENCODE Cell Line Data: Identifying Protein-coding Regions.

BMC Genomics. 2013 May 01; 14: 141.[more]

Xie L, Liu C, et al.
Protein Phosphatase 2A Catalytic Subunit α Plays a MyD88-dependent, Central Role in the Gene-specific Regulation of Endotoxin Tolerance.

Cell Reports. 2013 Mar 28; 3: 678-88.[more]

Yu Y, Xie L, et al.
GOFAST: an Integrated Approach for Efficient and Comprehensive Membrane Proteome Analysis.

Analytical Chemistry. 2012 Nov 06; 84: 9008-14.[more]

Bánfai B, Jia H, et al.
Long Noncoding RNAs Are Rarely Translated in Two Human Cell Lines.

Genome Research. 2012 Sep 01; 22: 1646-57.[more]

Huang W, Sun W, et al.
Incorporation of a Fluorous Diazirine Group Into Phosphatidylinositol 4,5-bisphosphate to Illustrate Its Interaction With ADP-ribosylation Factor 1.

Organic & Biomolecular Chemistry. 2012 Jul 21; 10: 5197-201.[more]

Lei Y, Wen H, et al.
The Mitochondrial Proteins NLRX1 and TUFM Form a Complex That Regulates Type I Interferon and Autophagy.

Immunity. 2012 Jun 29; 36: 933-46.[more]

Lee YY, Yu YB, et al.
BCLAF1 Is a Radiation-induced H2AX-interacting Partner Involved in γH2AX-mediated Regulation of Apoptosis and DNA Repair.

Cell Death & Disease. 2012 May 01; 3: e359.[more]

Jing L, Parker CE, et al.
Discovery of Biomarker Candidates for Coronary Artery Disease from an APOE-knock Out Mouse Model Using ITRAQ-based Multiplex Quantitative Proteomics.

Proteomics. 2011 Jul 01; 11: 2763-76.[more]

Huang Y, Shi Q, et al.
An Optimized Magnetite Microparticle-based Phosphopeptide Enrichment Strategy for Identifying Multiple Phosphorylation Sites in an Immunoprecipitated Protein.

Analytical Biochemistry. 2011 Jan 01; 408: 19-31.[more]

Leng T, Liu N, et al.
Dissection of DEN-induced Platelet Proteome Changes Reveals the Progressively Dys-regulated Pathways Indicative of Hepatocarcinogenesis.

Journal of Proteome Research. 2010 Dec 03; 9: 6207-19.[more]

Yu Y, Leng T, et al.
Global Analysis of the Rat and Human Platelet Proteome - the Molecular Blueprint for Illustrating Multi-functional Platelets and Cross-species Function Evolution.

Proteomics. 2010 Jul 01; 10: 2444-57.[more]

Song P, Bao H, et al.
Comprehensive Profiling of Metastasis-related Proteins in Paired Hepatocellular Carcinoma Cells With Different Metastasis Potentials.

Proteomics. Clinical Applications. 2009 Jul 01; 3: 841-52.[more]

Wilcox KC, Zhou L, et al.
Modifications of Superoxide Dismutase (SOD1) in Human Erythrocytes: a Possible Role in Amyotrophic Lateral Sclerosis.

The Journal of Biological Chemistry. 2009 May 15; 284: 13940-7.[more]

Dai P, Jeong SY, et al.
Modulation of TLR Signaling by Multiple MyD88-interacting Partners Including Leucine-rich Repeat Fli-I-interacting Proteins.

Journal of Immunology (Baltimore, Md. : 1950). 2009 Mar 15; 182: 3450-60.[more]

Liang S, Yu Y, et al.
Analysis of the Protein Complex Associated With 14-3-3 Epsilon by a Deuterated-leucine Labeling Quantitative Proteomics Strategy.

Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 2009 Mar 01; 877: 627-34.[more]

Xie L, Jing L, et al.
In Vivo Profiling Endogenous Interactions With Knock-out in Mammalian Cells.

Analytical Chemistry. 2009 Feb 15; 81: 1411-7.[more]

Xue Y, Yun D, et al.
Proteomic Dissection of Agonist-specific TLR-mediated Inflammatory Responses on Macrophages at Subcellular Resolution.

Journal of Proteome Research. 2008 Aug 01; 7: 3180-93.[more]

Chen X, Sun L, et al.
Amino Acid-coded Tagging Approaches in Quantitative Proteomics.

Expert Review of Proteomics. 2007 Feb 01; 4: 25-37.[more]