Fouts DE, Brinkac L, et al.
PanOCT: Automated Clustering of Orthologs Using Conserved Gene Neighborhood for Pan-genomic Analysis of Bacterial Strains and Closely Related Species.

Nucleic acids research. 2012 Aug 16;[more]

Klumpp J, Fouts DE, et al.
Next Generation Sequencing Technologies and the Changing Landscape of Phage Genomics.

Bacteriophage. 2012 Jul 01; 2: 190-199.[more]

Fouts DE, Torralba M, et al.
Bacterial Translocation and Changes In the Intestinal Microbiome In Mouse Models of Liver Disease.

Journal of hepatology. 2012 Jun 01; 56: 1283-92.[more]

Fouts DE, Pieper R, et al.
Integrated Next-generation Sequencing of 16S RDNA and Metaproteomics Differentiate the Healthy Urine Microbiome from Asymptomatic Bacteriuria In Neuropathic Bladder Associated With Spinal Cord Injury.

Journal of Translational Medicine. 2012 Apr 01; 10: 174.[more]

Ricaldi JN, Fouts DE, et al.
Whole Genome Analysis of Leptospira Licerasiae Provides Insight Into Leptospiral Evolution and Pathogenicity.

PLoS Neglected Tropical Diseases. 2012 Mar 01; 6: e1853.[more]

Yan, A. W., Fouts, D. E., et al.
Enteric Dysbiosis Associated With a Mouse Model of Alcoholic Liver Disease.

Hepatology (Baltimore, Md.). 2011 Jan 01; 53(1): 96-105.[more]

Stevens, R. H., Ektefaie, M. R., et al.
The Annotated Complete DNA Sequence of Enterococcus faecalis Bacteriophage PhiEf11 and Its Comparison to All Available Phage and Predicted Prophage Genomes

FEMS Microbiol Lett. 2010 Dec 23;[more]

Seal, B. S., Fouts, D. E., et al.
Clostridium Perfringens Bacteriophages PhiCP39O and PhiCP26F: Genomic Organization and Proteomic Analysis of the Virions

Arch Virol. 2010 Oct 21;[more]

Purushe, J., Fouts, D. E., et al.
Comparative Genome Analysis of Prevotella ruminicola and Prevotella Bryantii: Insights Into Their Environmental Niche

Microb Ecol. 2010 Jun 29;[more]

Wozniak, R. A., Fouts, D. E., et al.
Comparative ICE Genomics: Insights Into the Evolution of the SXT/R391 Family of ICEs

PLoS Genet. 2009 Dec 01; 5(12): e1000786.[more]