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Cuvelier, M. L., Allen, A. E., et al.
Targeted Metagenomics and Ecology of Globally Important Uncultured Eukaryotic Phytoplankton

Proc Natl Acad Sci U S A. 2010 Jul 28; 107(33): 14679-84.[more]

Allen, L. Z., Ishoey, T., et al.
Single Virus Genomics: a New Tool for Virus Discovery

PLoS ONE. 2011 Jan 01; 6(3): e17722.[more]

Zeigler Allen L, Allen EE, et al.
Influence of Nutrients and Currents on the Genomic Composition of Microbes Across an Upwelling Mosaic.

The ISME Journal. 2012 Jul 01; 6: 1403-14.[more]

Allen AE, Allen LZ, et al.
Lineage Specific Gene Family Enrichment at the Microscale in Marine Systems.

Current Opinion in Microbiology. 2013 Oct 01; 16: 605-17.[more]

Choi Y, Chan AP
PROVEAN Web Server: a Tool to Predict the Functional Effect of Amino Acid Substitutions and Indels.

Bioinformatics (Oxford, England). 2015 Aug 15; 31: 2745-7.[more]

Pickett BE, Greer DS, et al.
Virus Pathogen Database and Analysis Resource (ViPR): a Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community.

Viruses. 2012 Nov 01; 4: 3209-26.[more]

Pickett BE, Liu M, et al.
Metadata-driven Comparative Analysis Tool for Sequences (meta-CATS): an Automated Process for Identifying Significant Sequence Variations That Correlate With Virus Attributes.

Virology. 2013 Dec 01; 447: 45-51.[more]

Lee AJ, Das SR, et al.
Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.

Journal of Virology. 2015 May 15; 89: 5427-40.[more]

Bretschger O, Carpenter K, et al.
Functional and Taxonomic Dynamics of an Electricity-consuming Methane-producing Microbial Community.

Bioresource Technology. 2015 Jul 08;[more]

Nyaga MM, Jere KC, et al.
Whole Genome Detection of Rotavirus Mixed Infections in Human, Porcine and Bovine Samples Co-infected With Various Rotavirus Strains Collected from Sub-Saharan Africa.

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in infectious Diseases. 2015 Jul 27; 31: 321-34.[more]

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