JCVI: VDJPipe: a Pipelined Tool for Pre-processing Immune Repertoire Sequencing Data.
 
 
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Publications

Citation

Christley S, Levin MK, Toby IT, Fonner JM, Monson NL, Rounds WH, Rubelt F, Scarborough W, Scheuermann RH, Cowell LG

VDJPipe: a Pipelined Tool for Pre-processing Immune Repertoire Sequencing Data.

BMC Bioinformatics. 2017 Oct 11; 18. : 448.

External Citation

Abstract

Pre-processing of high-throughput sequencing data for immune repertoire profiling is essential to insure high quality input for downstream analysis. VDJPipe is a flexible, high-performance tool that can perform multiple pre-processing tasks with just a single pass over the data files.