CSGID

Available Organisms

Below is the list of microbial organisms for which the CSGID team at JCVI has genomic DNA available for cloning. If you wish to submit targets to CSGID for other organisms/strains please be aware:

If the ATCC has the genomic DNA in stock we will order an aliquot directly.
If the DNA is not obtainable then the investigator should provide the material either directly or through a third-party.

Viruses	NCBI Taxon ID	Date Added
Cowpox virus (Brighton Red)	265872
Dengue virus 1	11053
Dengue virus 2	11060
Dengue virus 3	11069
Dengue virus 4	11070
Human herpesvirus 6	10368
Monkeypox virus	10244
Myxoma virus (strain Lausanne)	31530
Prokaryotes	NCBI Taxon ID	Date Added
Acinetobacter baumannii ATCC 17978	400667	1/26/2011
Bacillus anthracis str. Ames	198094
Bacillus anthracis str. Sterne	260799
Bacillus cereus ATCC 10987	222523
Bacillus cereus ATCC 14579	226900
Bacillus subtilis subsp. subtilis str. 168	224308	1/26/2011
Bacteroides thetaiotaomicron VPI-5482	226186	1/26/2011
Bordetella pertussis Tohama I	257313	12/23/2009
Borrelia burgdorferi B31	224326
Burkholderia mallei ATCC 23344	243160
Campylobacter jejuni subsp. jejuni NCTC 11168	192222
Chlamydia trachomatis D/UW-3/CX	272561
Clostridium difficile 630	272563
Clostridium perfringens ATCC 13124	195103
Coxiella burnetii RSA 493	227377
Enterococcus faecalis V583	226185	1/26/2011
Escherichia coli 042	216592
Escherichia coli CFT073	199310
Escherichia coli K12 substr. MG1655	511145
Escherichia coli O157:H7 EDL933	155864
Escherichia coli O157:H7 str. Sakai	386585
Escherichia coli UTI89	364106	12/23/2009
Francisella tularensis subsp. tularensis SCHU S4	177416
Haemophilus influenzae PittII	374933
Helicobacter pylori 26695	85962
Helicobacter pylori J99	85963
Listeria monocytogenes 1/2a F6854	267409
Listeria monocytogenes EGD-e	169963
Listeria monocytogenes str. 4b F2365	265669
Listeria monocytogenes str. 4b H7858	267410
Mycobacterium smegmatis str. MC2 155	246196
Mycobacterium tuberculosis CDC1551	83331
Mycobacterium tuberculosis H37Rv	83332
Neisseria gonorrhoeae FA 1090	242231
Neisseria meningitidis MC58	122586
Pseudomonas aeruginosa PA14	652611	12/23/2009
Pseudomonas aeruginosa PAO1	208964
Pseudomonas fluorescens Pf-5	220664	12/23/2009
Pseudomonas putida KT2440	160488	12/23/2009
Rickettsia prowazekii str. Madrid E	272947
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150	295319	1/26/2011
Salmonella enterica subsp. enterica serovar Typhi str. CT18	220341
Salmonella enterica subsp. enterica serovar Typhi Ty2	209261
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	99287
Shigella flexneri 2a str. 2457T	198215
Staphylococcus aureus subsp. aureus COL	93062
Staphylococcus aureus subsp. aureus MRSA252	282458
Staphylococcus aureus subsp. aureus Mu50	158878
Staphylococcus aureus subsp. aureus MW2	196620
Streptococcus agalactiae 2603V/R	208435
Streptococcus pneumoniae R6	171101
Streptococcus pneumoniae TIGR4	170187
Streptococcus pyogenes MGAS5005	293653	12/23/2009
Vibrio cholerae O1 biovar El Tor str. N16961	243277
Vibrio cholerae O395	345073	1/26/2011
Vibrio fischeri ES114	312309	12/23/2009
Vibrio parahaemolyticus EB101	670	12/23/2009
Yersinia pestis CO92	214092
Yersinia pestis KIM	187410
Yersinia pseudotuberculosis IP 32953	273123