Annotation Statistics

Assembly build: Mt4.0
Optical Map build: v2

Gene Loci
Chr High
Confidence
Low
Confidence
Total Gene Models
1 4,409 2,294 6,703 8,387
2 3,682 2,182 5,864 7,246
3 4,253 2,503 6,756 8,482
4 4,994 2,321 7,315 9,133
5 3,566 2,267 5,833 7,073
6 2,031 1,840 3,871 4,400
7 3,915 2,296 6,211 7,587
8 3,696 2,089 5,785 7,270
Unplaced 1,115 1,441 2,556 2741
Total 31,661 19,233 50,894 62,319

Confidence classes are assigned for every gene based on the evidence as follows:

High Confidence (HC): The gene model is covered by expressed Medicago sequence e.g. EST alignments and/or RNA-seq alignments, or the gene call issupported by similarity to protein sequences with partial or full-length alignments.

Fully Covered: ≥ 97% ID, ≥ 99% qCov
Expressed: ≥ 97% ID, ≥ 30% and < 99% qCov
Homology: ≥ 70% ID, ≥ 70% qCov

Low Confidence (LC): The gene model is covered by expressed Medicago or the gene call is supported by similarity to other protein or genomic sequences with partial alignments.

Expressed: ≥ 97% ID, ≥ 10% AND < 30% qCov
Homology: ≥ 30% ID, ≥ 30% AND < 70% qCov