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Award #0604966 Award #0821966
Assembly build: Mt3.5v5
Annotation date: 10/2011
|Gene Loci||Confidence Class|
|Reference||Gene Loci||Gene Models||F
* Chr 0 represents unanchored BACS
A Confidence Class is assigned for every gene based on the evidence as follows:
F, full coverage/FL-cDNA: The complete gene model from translation start to translation stop is covered by expressed Medicago sequence, e.g. FL-
cDNA or EST alignments across the full length of the coding sequence.
E, expressed/EST matches: Expression of the gene is supported by Medicago EST sequence that matches the gene call (partially).
H, homology/heterologous: The gene call is supported by siilarity to Medicago or other ESTs, protein, FL-cDNA, genomic or other sequences with partial of full length alignments.
I, intrinsic/ab initio/inferred/hypothetical: The gene call is based only on intrinsic prediction tools such as FGENESH, Genescan or Eu gene, and no significant alignments to other sequences are available.
L, low probability: A very small gene call with less than 100 amino acids without respect to other evidence.
*This classification will be done top-down, so any gene call that does not fall under F will fall under E, and it it does not satisfy the requirements of E, it will be H and all gene calls that do not fulfill H will be called I.