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Solanaceae Genomics BLAST Search

The TIGR Solanaceae Genomics Resource BLAST page consists of several multi-fasta files for use in searching with the BLAST programs blastn, blastx, tblastn, or tblastx.

Note, that as of June 26, 2008, the databases within the TIGR Solanaceae Genomics Resource will no longer be updated due the migration of several Solanaceae projects to Michigan State University. Please bookmark the BLAST server at the Michigan State University Solanaceae Genomics Resource for future use.

This server runs WU-BLAST 2.0. [Disclaimer]

Select a program and database to search against:
Database	-- BAC Ends -- S. lycopersicum BAC Ends S. tuberosum BAC Ends -- BACs -- S. tuberosum BACs (Chr 6) -- Potato Microarray -- Potato 10k4 Array TCs -- Solanaceae Markers -- Solanaceae Markers S. tuberosum SNPs -- Solanaceae TAs -- TA C. annuum (Release 2) TA L. hirsutum (Release 2) TA N. bentahmiana (Release 2) TA N. langsdorffii x N. sanderae (Release 1) TA N. sylvestris (Release 2) TA N. tabacum (Release 2) TA Petunia x hybrida (Release 2) TA S. chacoense (Release 2) TA S. lycopersicum (Release 2) TA S. lycopersicum x S. pimpinellifolium (Release 2) TA S. pennellii (Release 2) TA S. tuberosum (Release 2) -- SOLAR DB -- R-gene sets from Solanaceae family R-gene sets from C. annuum R-gene sets from N. tabacum R-gene sets from S. lycopersicon R-gene sets from S. melongena R-gene sets from S. tuberosum & S. demissum R-gene sets from other Solanaceae Species -- TAIR -- TAIR Annotation Release 6 CDS TAIR Annotation Release 6 Genomic TAIR Annotation Release 6 Protein
Program	blastn blastp blastx tblastn tblastx
Alignments	0 1 2 3 4 5 10 15 20 30 40 50 100 250 500
Upload a file containing a sequence OR paste it into the textbox: (Note: If both are entered, the file will be ignored.)
Enter the name of the file containing a sequence in FASTA or raw format: Enter your sequence in FASTA or raw format: Sequence identifier (for definition line if raw sequence entered):
Options:

Matrix	blosum62 blosum100 blosum30 blosum35 blosum40 blosum45 blosum50 blosum55 blosum60 blosum65 blosum70 blosum75 blosum80 blosum85 blosum90 blosumn dayhoff gonnet identity match nuc.4.2 nuc.4.4 pam10 pam100 pam110 pam120 pam120.cdi pam130 pam140 pam150 pam160 pam160.cdi pam170 pam180 pam190 pam20 pam200 pam200.cdi pam210 pam220 pam230 pam240 pam250 pam250.cdi pam260 pam270 pam280 pam290 pam30 pam300 pam310 pam320 pam330 pam340 pam350 pam360 pam370 pam380 pam390 pam40 pam400 pam40.cdi pam410 pam420 pam430 pam440 pam450 pam460 pam470 pam480 pam490 pam50 pam500 pam60 pam70 pam80 pam80.cdi pam90	Filter	default none dust nmerge nseg pmerge pseg seg seg+xnu xnu xnu+seg	Expect	0.001 0.01 0.1 1.0 10 100 1000
Cutoff	default 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120	Strand	default top bottom	Descriptions	0 1 2 3 4 5 10 15 20 30 40 50 100 250 500
Wordlength (for blastn only):   default 11 15 18 20			Echofilter
Graphical Overview		Ignore Hypotheticals

The email option allows the user to be notified by email when the blast search is completed. The email will contain a link to the results. Use this option when running a lengthy search. To activate this option, check the box to the left and fill in an email address in the box to the right.

Send a link to results to email address:

    

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