Apr 17, 2009
- The website has been revised to reflect only the archiving of the potato Gene Expression data.
Sept 09, 2008
- The website has been revised to reflect only the potato chromosome 6 sequencing project and the archiving of the potato Gene Expression data.
June 27, 2008
- The NSF-funded Generation of Potato Sequence and Annotation Resources project has moved to Michigan State University. The Comparative Genomics Resource initially developed at TIGR has also moved to Michigan State University.
- Project information, personnel, contact details, data, and analysis tools can be accessed at http://solanaceae.plantbiology.msu.edu/.
- Only the chromosome 6 BAC sequencing status pages will be maintained at the J Craig Venter Institute. Please change your bookmarks appropriately.
August 30, 2007
- The Solanaceae Genomic Resource Page has been reorganized.
- The NSF Expression Project will be ending on September 30, 2007. Studies will be released to GEO. The site will be moving to Michigan State for long term maintenance.
July 24, 2007
- New data release: Comparative Solanum wild species transcription profiles under controlled water stress conditions.
- New data release: Gene expression during innate immunity in tobacco triggered by bacteria
May 29, 2007
- As part of our efforts in the Potato Sequencing Consortium, we end sequenced all of the BAC clones in the RHPOTKEY library. The sequencing success rate was 90.2% with an average edited length of 621 bp. A total of 65492 clones (84%) had both end reads. The sequences can be BLAST searched here on downloaded from our FTP site. All sequences have been deposited into GSS division of Genbank.
May 1, 2007
- New data release: Effect of TIF on gene expression under inductive and non-inductive photoperiods.
- New data release: Functional genomic analysis of cold acclimation in the genus Solanum.
April 15, 2007
- TIGR Potato cDNA Microarrays are no longer available for distribution. Users interested in obtaining potato microarrays are advised to consider several commercial options (Combimatrix, Nimblegen) and also the POCI oligo array.
March 14, 2007
- The final date for ordering TIGR Potato cDNA Microarrays is April 15th, 2007. Orders received after this date will not be accepted.
March 5, 2007
March 1, 2007
- 24404 Solanum tuberosum BAC end sequences have been submitted to GenBank (Accession numbers EI369195 to EI373082). They are also available for download from the ftp site.
February 13, 2007
- TIGR Solananceae Genomics Resource new website layout launch.
February 5, 2007
- New data release: Molecular Markers for Predicting Potato Tuber Bruise Susceptibility.
- New data release: Application of Functional Genomics to the Study of Solanacea's Defense Mechanisms against Xanthomonas sp. Pathogenicity.
- New data release: Profile of Animal Cell Death Gene Expressing Nicotiana tabacum.
September 26, 2006
- The 10kv1-4 microarray clone annotation has been updated with build 11 of the DFCI Gene Index for Potato.
September 25, 2006
- Position closed: TIGR is no longer accepting applications for the the Bioinformatics Engineer position in the Plant Genomics group. We thank all the applicants who expressed interest in this opportunity.
September 19, 2006
- The 10kv1-4 microarray clone annotations has been updated with annotation from the version 2 build of the TIGR Plant Transcript Assemblies for Potato.
August 21, 2006
- TIGR has been funded by the National Science Foundation to sequence chromosome VI of potato as part of the international Potato Genome Sequencing Consortium (PGSC) (http://www.potatogenome.net) and to develop and provide bioinformatic resources for potato. For more information, visit the Potato Sequencing page.
July 19, 2006
- New data release: Host responses of Nicotiana benthamiana to infection by multiple plant viruses.
- New data release: Profiling gene expression levels to investigate the degree of substantial equivalence between GM and non-GM potato.
- New data release: The effect of RPN9 silencing in N. benthamiana.
- New data release: Potato autopolyploidy.
June 15, 2006
- The Potato Functional Genomics project website will be unavailable July 1-4, 2006 due to scheduled server maintenance.
June 8, 2006
- The potato 10k version 4 array platform layout has been deposited in The Gene Expression Omnibus (GEO). Users who wish to deposit their expression data into GEO may use the accession GPL3838.
June 7, 2006
- Position opening: TIGR is seeking qualified applicants for a Bioinformatics Engineer position within the Plant Genomics Department. For a detailed description of what the position entails, requirements, and how to apply, visit the Project Openings page.
May 4, 2006
- cDNA clones (5' and 3' ESTs) across all versions of the potato 10k array have been aligned to their equivalent potato Transcript Assemblies. The potato microarray clone table has been updated, and searches now support queries for Transcript Assembly identifiers (e.g. TA72_4113).
Last modified: Thursday, 16-Apr-2009 12:48:39 EDT
