Publications

Science (New York, N.Y.). 2005-01-07; 307.5706: 105-8.
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, Madupu R, Nelson KE, Kang KH, Impraim M, Tran K, Robinson JM, Forberger HA, Fraser CM, Zinder SH, Heidelberg JF
PMID: 15637277
BMC bioinformatics. 2005-01-05; 6.2.
Visualization of comparative genomic analyses by BLAST score ratio
Rasko DA, Myers GS, Ravel J
PMID: 15634352
PLoS biology. 2005-01-04; 3.1: e15.
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, Deboy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, Ayodeji MA, Shvartsbeyn A, Schatz MC, Badger JH, Fraser CM, Nelson KE
PMID: 15660156
Genome biology. 2005-01-01; 6.1: R10.
Microarray-based resequencing of multiple Bacillus anthracis isolates
Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, Bowman GR, Galloway DR, Mateczun A
PMID: 15642093
Journal of bacteriology. 2005-01-01; 187.1: 366-75.
Identification of a Dichelobacter nodosus ferric uptake regulator and determination of its regulatory targets
Parker D, Kennan RM, Myers GS, Paulsen IT, Rood JI
PMID: 15601721
Nucleic acids research. 2005-01-01; 33.Database issue: 5503-11.
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage
Bishop R, Shah T, Pelle R, Hoyle D, Pearson T, Haines L, Brass A, Hulme H, Graham SP, Taracha EL, Kanga S, Lu C, Hass B, Wortman J, White O, Gardner MJ, Nene V, de Villiers EP
PMID: 16186131
Nucleic acids research. 2005-01-01; 33.Database issue: D71-4.
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J
PMID: 15608288
Genome biology. 2005-01-01; 6.1: R23.
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC
PMID: 15774024
Genome biology. 2005-01-01; 6.1: 402.
Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC
PMID: 15998463
Genome biology. 2005-01-01; 6.1: 310.
Ways to get from plant genomes to phenomes: via yeast
Rabinowicz PD, Rensink W
PMID: 15774037

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