Publications

Biotechnology advances. 2024-10-10; 77.108462.
The current progress of tandem chemical and biological plastic upcycling
Hu Y, Tian Y, Zou C, Moon TS
PMID: 39395608
Cancers. 2024-10-02; 16.19:
Secondary Transcriptomic Analysis of Triple-Negative Breast Cancer Reveals Reliable Universal and Subtype-Specific Mechanistic Markers
Rapier-Sharman N, Spendlove MD, Poulsen JB, Appel AE, Wiscovitch-Russo R, Vashee S, Gonzalez-Juarbe N, Pickett BE
PMID: 39409999
Expert review of respiratory medicine. 2024-10-01; 18.10: 815-829.
The unique metabolic and lipid profiles of patients with severe COVID-19 compared to severe community-acquired pneumonia: a potential prognostic and therapeutic target
Ibáñez-Prada ED, Guerrero JL, Bustos IG, León L, Fuentes YV, Santamaría-Torres M, Restrepo-Martínez JM, Serrano-Mayorga CC, Mendez L, Gomez-Duque S, Santacruz CA, Conway-Morris A, Martín-Loeches I, Gonzalez-Juarbe N, Cala MP, Reyes LF
PMID: 39327745
Stroke. 2024-10-01; 55.10: e266-e268.
Unveiling Molecular Diversity in Cerebral Thrombi via Spatial Transcriptomics
Walker M, Federico E, Espinoza JL, Dupont CL
PMID: 39206540
Proceedings of the National Academy of Sciences of the United States of America. 2024-10-01; 121.40: e2319177121.
Molecular forecasting of domoic acid during a pervasive toxic diatom bloom
Brunson JK, Thukral M, Ryan JP, Anderson CR, Kolody BC, James CC, Chavez FP, Leaw CP, Rabines AJ, Venepally P, Fussy Z, Zheng H, Kudela RM, Smith GJ, Moore BS, Allen AE
PMID: 39298472
Scientific reports. 2024-09-28; 14.1: 22408.
Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome
James CC, Allen AE, Lampe RH, Rabines A, Barton AD
PMID: 39333653
PLoS pathogens. 2024-08-23; 20.8: e1012495.
Fitness factor genes conserved within the multi-species core genome of Gram-negative Enterobacterales species contribute to bacteremia pathogenesis
Mobley HLT, Anderson MT, Moricz BS, Severin GB, Holmes CL, Ottosen EN, Eichler T, Gupta S, Paudel S, Sinha R, Mason S, Himpsl SD, Brown AN, Gaca M, Kiser CM, Clarke TH, Fouts DE, DiRita VJ, Bachman MA
PMID: 39178317
Applied and environmental microbiology. 2024-08-21; 90.8: e0108324.
Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant
Peña-Montenegro TD, Kleindienst S, Allen AE, Eren AM, McCrow JP, Arnold J, Joye SB
PMID: 39041797
mBio. 2024-08-14; 15.8: e0003824.
Marine bacteria Alteromonas spp. require UDP-glucose-4-epimerase for aggregation and production of sticky exopolymer
Robertson JM, Garza EA, Stubbusch AKM, Dupont CL, Hwa T, Held NA
PMID: 38958440
Nucleic acids research. 2024-08-12; 52.14: e63.
Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing
Espinoza JL, Phillips A, Prentice MB, Tan GS, Kamath PL, Lloyd KG, Dupont CL
PMID: 38909293

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