Publications

Antibiotics (Basel, Switzerland). 2022-11-19; 11.11:
Design of a Bacteriophage Cocktail Active against Shigella Species and Testing of Its Therapeutic Potential in Galleria mellonella
Filippov AA, Su W, Sergueev KV, Kevorkian RT, Snesrud EC, Srijan A, He Y, Fouts DE, Lurchachaiwong W, McGann PT, Ellison DW, Swierczewski BE, Nikolich MP
PMID: 36421303
Scientific data. 2022-11-16; 9.1: 702.
NETome: A model to Decode the Human Genome and Proteome of Neutrophil Extracellular Traps
Scieszka D, Lin YH, Li W, Choudhury S, Yu Y, Freire M
PMID: 36385149
International journal of cancer. 2022-11-15; 151.10: 1703-1716.
Progressive dysbiosis of human orodigestive microbiota along the sequence of gastroesophageal reflux, Barrett's esophagus and esophageal adenocarcinoma
Hao Y, Karaoz U, Yang L, Yachimski PS, Tseng W, Nossa CW, Ye W, Tseng M, Poles M, Francois F, Traube M, Brown SM, Chen Y, Torralba M, Peek RM, Brodie EL, Pei Z
PMID: 35751398
Scientific reports. 2022-11-03; 12.1: 18547.
Sampling from four geographically divergent young female populations demonstrates forensic geolocation potential in microbiomes
Clarke T, Brinkac L, Greco C, Alleyne AT, Carrasco P, Inotroza C, Inostroza C, Tau T, Wisitrasameewong W, Torralba MG, Nelson K, Singh H
PMID: 36329122
PNAS nexus. 2022-11-01; 1.5: pgac239.
Differential network analysis of oral microbiome metatranscriptomes identifies community scale metabolic restructuring in dental caries
Espinoza JL, Torralba M, Leong P, Saffery R, Bockmann M, Kuelbs C, Singh S, Hughes T, Craig JM, Nelson KE, Dupont CL
PMID: 36712365
Trends in cell biology. 2022-11-01; 32.11: 900-907.
Cellular mechanics during division of a genomically minimal cell
Pelletier JF, Glass JI, Strychalski EA
PMID: 35907702
Environmental microbiology. 2022-11-01; 24.11: 5408-5424.
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations
Koester I, Quinlan ZA, Nothias LF, White ME, Rabines A, Petras D, Brunson JK, Dührkop K, Ludwig M, Böcker S, Azam F, Allen AE, Dorrestein PC, Aluwihare LI
PMID: 36222155
mSystems. 2022-10-26; 7.5: e0049122.
Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples
Baker JL
PMID: 35993719
Frontiers in bioinformatics. 2022-10-24; 2.1020189.
Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation
Wallace ZS, Davis J, Niewiadomska AM, Olson RD, Shukla M, Stevens R, Zhang Y, Zmasek CM, Scheuermann RH
PMID: 36353215
Nature communications. 2022-10-21; 13.1: 6275.
Single cell transcriptomic profiling of a neuron-astrocyte assembloid tauopathy model
Rickner HD, Jiang L, Hong R, O'Neill NK, Mojica CA, Snyder BJ, Zhang L, Shaw D, Medalla M, Wolozin B, Cheng CS
PMID: 36271092

Pages