GCID Publications

Journal of medical virology. 2015-01-01; 87.1: 79-101.
Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non-vaccinated South African children presenting with diarrhea
Magagula NB, Esona MD, Nyaga MM, Stucker KM, Halpin RA, Stockwell TB, Seheri ML, Steele AD, Wentworth DE, Mphahlele MJ
PMID: 24841697
Methods in molecular biology (Clifton, N.J.). 2015-01-01; 1275.103-15.
Degenerate primer design for highly variable genomes
Li K, Shrivastava S, Stockwell TB
PMID: 25697654
Antimicrobial agents and chemotherapy. 2015-01-01; 59.1: 536-43.
Genomic and transcriptomic analyses of colistin-resistant clinical isolates of Klebsiella pneumoniae reveal multiple pathways of resistance
Wright MS, Suzuki Y, Jones MB, Marshall SH, Rudin SD, van Duin D, Kaye K, Jacobs MR, Bonomo RA, Adams MD
PMID: 25385117
BMC genomics. 2014-12-23; 15.1168.
NextGen sequencing reveals short double crossovers contribute disproportionately to genetic diversity in Toxoplasma gondii
Khan A, Shaik JS, Behnke M, Wang Q, Dubey JP, Lorenzi HA, Ajioka JW, Rosenthal BM, Sibley LD
PMID: 25532601
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2014-12-01; 28.513-23.
Comparative genomic analysis of genogroup 1 (Wa-like) rotaviruses circulating in the USA, 2006-2009
Dugaw K, Roy S, Esona MD, Bloom G, Yam PA, Kirkness EF, Jameson S, Akopov A, McKee B, McAllen JK, Wikswo ME, Riley AM, Thompson K, Cortese MM, Wright C, Payne DC, Parashar UD, Drew W, Gentsch JR, Dunn J, Hoover VE, Bowen MD, Szilagyi PG, National Rotavirus Strain Surveillance System, New Vaccine Surveillance Network, Weinberg GA, Staat MA, Edwards KM, Chappell J
PMID: 25301114
Mycopathologia. 2014-12-01; 178.5-6: 331-9.
Large-scale transcriptional response to hypoxia in Aspergillus fumigatus observed using RNAseq identifies a novel hypoxia regulated ncRNA
Losada L, Barker BM, Pakala S, Pakala S, Joardar V, Zafar N, Mounaud S, Fedorova N, Nierman WC, Cramer RA
PMID: 24996522
International journal of systematic and evolutionary microbiology. 2014-12-01; 64.Pt 12: 4061-7.
Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans
Bourhy P, Collet L, Brisse S, Picardeau M
PMID: 25249563
Emerging infectious diseases. 2014-12-01; 20.12: 2144-7.
Equine influenza A(H3N8) virus isolated from Bactrian camel, Mongolia
Yondon M, Zayat B, Nelson MI, Heil GL, Anderson BD, Lin X, Halpin RA, McKenzie PP, White SK, Wentworth DE, Gray GC
PMID: 25418532
BMC bioinformatics. 2014-11-19; 15.357.
NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly
McCorrison JM, Venepally P, Singh I, Fouts DE, Lasken RS, Methé BA
PMID: 25407910
Virus genes. 2014-10-01; 49.2: 196-207.
Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa
Nyaga MM, Stucker KM, Esona MD, Jere KC, Mwinyi B, Shonhai A, Tsolenyanu E, Mulindwa A, Chibumbya JN, Adolfine H, Halpin RA, Roy S, Stockwell TB, Berejena C, Seheri ML, Mwenda JM, Steele AD, Wentworth DE, Mphahlele MJ
PMID: 24952422

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