BMC bioinformatics. 2017-10-11; 18.1: 448.

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

Christley S, Levin MK, Toby IT, Fonner JM, Monson NL, Rounds WH, Rubelt F, Scarborough W, Scheuermann RH, Cowell LG

PMID: 29020925


Pre-processing of high-throughput sequencing data for immune repertoire profiling is essential to insure high quality input for downstream analysis. VDJPipe is a flexible, high-performance tool that can perform multiple pre-processing tasks with just a single pass over the data files.