Publications

PloS one. 2013-01-01; 8.5: e63139.
Analyses of the stability and core taxonomic memberships of the human microbiome
Li K, Bihan M, Methé BA
PMID: 23671663
PloS one. 2013-01-01; 8.12: e62216.
Improved method for linear B-cell epitope prediction using antigen's primary sequence
Singh H, Ansari HR, Raghava GP
PMID: 23667458
PloS one. 2013-01-01; 8.12: e80597.
Simultaneous transcriptional profiling of bacteria and their host cells
Humphrys MS, Creasy T, Sun Y, Shetty AC, Chibucos MC, Drabek EF, Fraser CM, Farooq U, Sengamalay N, Ott S, Shou H, Bavoil PM, Mahurkar A, Myers GS
PMID: 24324615
PLoS pathogens. 2013-01-01; 9.8: e1003570.
Influenza a virus migration and persistence in North American wild birds
Bahl J, Krauss S, Kühnert D, Fourment M, Raven G, Pryor SP, Niles LJ, Danner A, Walker D, Mendenhall IH, Su YC, Dugan VG, Halpin RA, Stockwell TB, Webby RJ, Wentworth DE, Drummond AJ, Smith GJ, Webster RG
PMID: 24009503
PLoS genetics. 2013-01-01; 9.9: e1003771.
Transmission of Hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen cryptococcus gattii
Voelz K, Ma H, Phadke S, Byrnes EJ, Zhu P, Mueller O, Farrer RA, Henk DA, Lewit Y, Hsueh YP, Fisher MC, Idnurm A, Heitman J, May RC
PMID: 24039607
PloS one. 2013-01-01; 8.12: e56111.
A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease
Yeoman CJ, Thomas SM, Miller ME, Ulanov AV, Torralba M, Lucas S, Gillis M, Cregger M, Gomez A, Ho M, Leigh SR, Stumpf R, Creedon DJ, Smith MA, Weisbaum JS, Nelson KE, Wilson BA, White BA
PMID: 23405259
PloS one. 2013-01-01; 8.12: e54101.
Insular organization of gene space in grass genomes
Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J
PMID: 23326580
Current topics in microbiology and immunology. 2013-01-01; 363.21-41.
Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling
Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, McAteer K, Heffron F, Peterson SN, Motin V, Palsson BO, Smith RD, Adkins JN
PMID: 22886542
Journal of bioscience and bioengineering. 2013-01-01; 115.1: 58-63.
Adaptation of soil microbes during establishment of microbial fuel cell consortium fed with lactate
Futamata H, Bretschger O, Cheung A, Kan J, Owen R, Nealson KH
PMID: 22902277
Nature communications. 2013-01-01; 4.2091.
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Allen A, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L
PMID: 23820484