Publications

PloS one. 2012-01-01; 7.5: e39315.
Evaluation of 16S rDNA-based community profiling for human microbiome research
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, Bihan M, Bloom T, Crabtree J, Courtney L, Carmichael L, Dooling D, Erlich RL, Farmer C, Fulton L, Fulton R, Gao H, Gill JA, Haas BJ, Hemphill L, Hall O, Hamilton SG, Hepburn TA, Lennon NJ, Joshi V, Kells C, Kovar CL, Kalra D, Li K, Lewis L, Leonard S, Muzny DM, Mardis E, Mihindukulasuriya K, Magrini V, O'Laughlin M, Pohl C, Qin X, Ross K, Ross MC, Rogers YH, Singh N, Shang Y, Wilczek-Boney K, Wortman JR, Worley KC, Youmans BP, Yooseph S, Zhou Y, Schloss PD, Wilson R, Gibbs RA, Nelson KE, Weinstock G, DeSantis TZ, Petrosino JF, Highlander SK, Birren BW
PMID: 22720093
Molecular ecology. 2012-01-01; 21.1: 57-70.
Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus
Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A
PMID: 22106836
Scientific reports. 2012-01-01; 2.490.
Metagenomes of Mediterranean coastal lagoons
Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, Dupont CL, McMahon KD, Camacho A, Rodriguez-Valera F
PMID: 22778901
PloS one. 2012-01-01; 7.3: e46688.
Predicting the functional effect of amino acid substitutions and indels
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP
PMID: 23056405
Ecology letters. 2012-01-01; 15.1: 24-33.
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds
Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC
PMID: 22008513
Methods in cell biology. 2012-01-01; 109.53-81.
Whole genome studies of Tetrahymena
Coyne RS, Stover NA, Miao W
PMID: 22444143
PloS one. 2012-01-01; 7.5: e51762.
A novel SERPINA1 mutation causing serum alpha(1)-antitrypsin deficiency
Saunders DN, Tindall EA, Shearer RF, Roberson J, Decker A, Wilson JA, Hayes VM
PMID: 23251618
PloS one. 2012-01-01; 7.5: e33280.
Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids
Casjens SR, Mongodin EF, Qiu WG, Luft BJ, Schutzer SE, Gilcrease EB, Huang WM, Vujadinovic M, Aron JK, Vargas LC, Freeman S, Radune D, Weidman JF, Dimitrov GI, Khouri HM, Sosa JE, Halpin RA, Dunn JJ, Fraser CM
PMID: 22432010
PloS one. 2012-01-01; 7.3: e33016.
Molecular epidemiology of Neisseria meningitidis serogroup B in Brazil
de Filippis I, de Lemos AP, Hostetler JB, Wollenberg K, Sacchi CT, Dunning Hotopp JC, Harrison LH, Bash MC, Prevots DR
PMID: 22431994
PloS one. 2012-01-01; 7.5: e42047.
Metagenomic exploration of viruses throughout the Indian Ocean
Williamson SJ, Allen LZ, Lorenzi HA, Fadrosh DW, Brami D, Thiagarajan M, McCrow JP, Tovchigrechko A, Yooseph S, Venter JC
PMID: 23082107