Publications

PLoS computational biology. 2012-01-01; 8.6: e1002358.

Metabolic reconstruction for metagenomic data and its application to the human microbiome

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C

PMID: 22719234

PloS one. 2012-01-01; 7.5: e32118.

Analyses of the microbial diversity across the human microbiome

Li K, Bihan M, Yooseph S, Methé BA

PMID: 22719823

Journal of bacteriology. 2012-01-01; 194.2: 376-94.

A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle

Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E

PMID: 22056929

Frontiers in immunology. 2012-01-01; 3.302.

Advances in human B cell phenotypic profiling

Kaminski DA, Wei C, Qian Y, Rosenberg AF, Sanz I

PMID: 23087687

Journal of bacteriology. 2012-01-01; 194.2: 545-6.

Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii

Schutzer SE, Fraser-Liggett CM, Qiu WG, Kraiczy P, Mongodin EF, Dunn JJ, Luft BJ, Casjens SR

PMID: 22207749

PloS one. 2012-01-01; 7.5: e44224.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC

PMID: 22970184

Molecular ecology. 2012-01-01; 21.1: 57-70.

Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus

Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A

PMID: 22106836

Nucleic acids research. 2012-01-01; 40.Database issue: D306-12.

InterPro in 2011: new developments in the family and domain prediction database

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY

PMID: 22096229

Ecology letters. 2012-01-01; 15.1: 24-33.

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC

PMID: 22008513

Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.23-45.

Bioinformatics approaches and software for detection of secondary metabolic gene clusters

Fedorova ND, Moktali V, Medema MH

PMID: 23065606