Publications

Journal of bacteriology. 2009-03-01; 191.6: 1992-3.
Complete and draft genome sequences of six members of the Aquificales
Reysenbach AL, Hamamura N, Podar M, Griffiths E, Ferreira S, Hochstein R, Heidelberg J, Johnson J, Mead D, Pohorille A, Sarmiento M, Schweighofer K, Seshadri R, Voytek MA
PMID: 19136599
Fungal genetics and biology : FG & B. 2009-03-01; 46 Suppl 1.S2-13.
The 2008 update of the Aspergillus nidulans genome annotation: a community effort
Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karányi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G
PMID: 19146970
Developmental cell. 2009-03-01; 16.3: 466-81.
NA-Seq: a discovery tool for the analysis of chromatin structure and dynamics during differentiation
Gargiulo G, Levy S, Bucci G, Romanenghi M, Fornasari L, Beeson KY, Goldberg SM, Cesaroni M, Ballarini M, Santoro F, Bezman N, Frigè G, Gregory PD, Holmes MC, Strausberg RL, Pelicci PG, Urnov FD, Minucci S
PMID: 19289091
Trends in biotechnology. 2009-03-01; 27.3: 151-7.
Potential of Aspergillus flavus genomics for applications in biotechnology
Cleveland TE, Yu J, Fedorova N, Bhatnagar D, Payne GA, Nierman WC, Bennett JW
PMID: 19195728
Molecules and cells. 2009-02-28; 27.2: 237-41.
Simple sequence repeat (SSR)-based gene diversity in Burkholderia pseudomallei and Burkholderia mallei
Song H, Hwang J, Myung J, Seo H, Yi H, Sim HS, Kim BS, Nierman WC, Kim HS
PMID: 19277507
BMC bioinformatics. 2009-02-25; 10.70.
An improved ontological representation of dendritic cells as a paradigm for all cell types
Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG
PMID: 19243617
Proteome science. 2009-02-19; 7.5.
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes
Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN
PMID: 19228400
Proceedings of the National Academy of Sciences of the United States of America. 2009-02-10; 106.6: 1886-91.
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL
PMID: 19181860
Proceedings of the National Academy of Sciences of the United States of America. 2009-02-10; 106.6: 1948-53.
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA
PMID: 19181843
Microbiology (Reading, England). 2009-02-01; 155.Pt 2: 498-512.
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN
PMID: 19202098