Publications

PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743
PloS one. 2009-01-01; 4.5: e4207.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA
PMID: 19148287
Proceedings of the National Academy of Sciences of the United States of America. 2008-12-23; 105.51: 20404-9.
One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome
Gibson DG, Benders GA, Axelrod KC, Zaveri J, Algire MA, Moodie M, Montague MG, Venter JC, Smith HO, Hutchison CA
PMID: 19073939
Bioinformatics (Oxford, England). 2008-12-15; 24.24: 2818-24.
Aggressive assembly of pyrosequencing reads with mates
Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G
PMID: 18952627
BMC genomics. 2008-12-10; 9.595.
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Lorenzi H, Thiagarajan M, Haas B, Wortman J, Hall N, Caler E
PMID: 19077187
BMC bioinformatics. 2008-12-09; 9.529.
The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results
Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R
PMID: 19068132
Journal of virology. 2008-12-01; 82.24: 12422-31.
Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences
Alekseev KP, Vlasova AN, Jung K, Hasoksuz M, Zhang X, Halpin R, Wang S, Ghedin E, Spiro D, Saif LJ
PMID: 18842722
Experimental parasitology. 2008-12-01; 120.4: 357-63.
Schistosoma mansoni: Microarray analysis of gene expression induced by host sex
Waisberg M, Lobo FP, Cerqueira GC, Passos LK, Carvalho OS, El-Sayed NM, Franco GR
PMID: 18822286
The ISME journal. 2008-12-01; 2.12: 1194-212.
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F
PMID: 18670397
BMC genomics. 2008-11-27; 9.566.
Genomic islands from five strains of Burkholderia pseudomallei
Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P
PMID: 19038032