Publications

Bioinformatics (Oxford, England). 2005-05-01; 21.9: 1782-8.
Efficient implementation of a generalized pair hidden Markov model for comparative gene finding
Majoros WH, Pertea M, Salzberg SL
PMID: 15691859
Nature methods. 2005-05-01; 2.5: 351-6.
Standardizing global gene expression analysis between laboratories and across platforms
Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H, Members of the Toxicogenomics Research Consortium
PMID: 15846362
Plant physiology. 2005-05-01; 138.1: 18-26.
The institute for genomic research Osa1 rice genome annotation database
Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR
PMID: 15888674
Applied and environmental microbiology. 2005-05-01; 71.5: 2530-8.
DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
Methé BA, Webster J, Nevin K, Butler J, Lovley DR
PMID: 15870343
Nature methods. 2005-05-01; 2.5: 345-50.
Multiple-laboratory comparison of microarray platforms
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W
PMID: 15846361
Journal of bacteriology. 2005-05-01; 187.10: 3339-51.
Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans
Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME
PMID: 15866918
Vaccine. 2005-04-27; 23.23: 3084-95.
Subunit vaccine based on the p67 major surface protein of Theileria parva sporozoites reduces severity of infection derived from field tick challenge
Musoke A, Rowlands J, Nene V, Nyanjui J, Katende J, Spooner P, Mwaura S, Odongo D, Nkonge C, Mbogo S, Bishop R, Morzaria S
PMID: 15811656
Vaccine. 2005-04-15; 23.21: 2791-800.
Novel baculovirus-derived p67 subunit vaccines efficacious against East Coast fever in cattle
Kaba SA, Musoke AJ, Schaap D, Schetters T, Rowlands J, Vermeulen AN, Nene V, Vlak JM, van Oers MM
PMID: 15780727
Molecular biology and evolution. 2005-04-01; 22.4: 845-55.
Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice
Nagaki K, Neumann P, Zhang D, Ouyang S, Buell CR, Cheng Z, Jiang J
PMID: 15616142
Pharmacogenomics. 2005-04-01; 6.3: 245-58.
Genomic approaches for reconstructing gene networks
Lee NH
PMID: 16013956