Publications

Genome research. 2004-01-01; 14.1: 149-59.
Hierarchical scaffolding with Bambus
Pop M, Kosack DS, Salzberg SL
PMID: 14707177
Methods in molecular biology (Clifton, N.J.). 2004-01-01; 270.279-94.
Using the TIGR assembler in shotgun sequencing projects
Pop M, Kosack D
PMID: 15020832
Methods in molecular biology (Clifton, N.J.). 2004-01-01; 270.309-18.
Optimized multiplex polymerase chain reaction: an effective method for rapid gap closure
Radune D, Tettelin H
PMID: 15020834
Methods in molecular biology (Clifton, N.J.). 2004-01-01; 270.1-6.
Use of BAC end sequences for SNP discovery
Weil MM, Pershad R, Wang R, Zhao S
PMID: 15024155
Nucleic acids research. 2004-01-01; 32.Database issue: D360-3.
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants
Ouyang S, Buell CR
PMID: 14681434
Nucleic acids research. 2004-01-01; 32.Database issue: D258-61.
The Gene Ontology (GO) database and informatics resource
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R, Gene Ontology Consortium
PMID: 14681407
Genome biology. 2004-01-01; 5.2: R12.
Versatile and open software for comparing large genomes
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL
PMID: 14759262
Genome biology. 2004-01-01; 5.2: R61.
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE
PMID: 15345045
Parasitology. 2004-01-01; 129 Suppl.S271-83.
Theileria: intracellular protozoan parasites of wild and domestic ruminants transmitted by ixodid ticks
Bishop R, Musoke A, Morzaria S, Gardner M, Nene V
PMID: 15938515
The American journal of pathology. 2004-01-01; 164.1: 9-16.
Multi-platform, multi-site, microarray-based human tumor classification
Bloom G, Yang IV, Boulware D, Kwong KY, Coppola D, Eschrich S, Quackenbush J, Yeatman TJ
PMID: 14695313