Publications

Environmental microbiology. 2017-07-01; 19.7: 2769-2784.
The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1)
León-Zayas R, Peoples L, Biddle JF, Podell S, Novotny M, Cameron J, Lasken RS, Bartlett DH
PMID: 28474498
Bioinformatics (Oxford, England). 2017-07-01; 33.13: 1944-1952.
FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis
Zhang Y, Topham DJ, Thakar J, Qiu X
PMID: 28334094
Microbial ecology. 2017-07-01; 74.1: 250-258.
Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate
Amato KR, Van Belle S, Di Fiore A, Estrada A, Stumpf R, White B, Nelson KE, Knight R, Leigh SR
PMID: 28124727
The Journal of clinical investigation. 2017-06-30; 127.7: 2829-2841.
Intestinal fungi contribute to development of alcoholic liver disease
Yang AM, Inamine T, Hochrath K, Chen P, Wang L, Llorente C, Bluemel S, Hartmann P, Xu J, Koyama Y, Kisseleva T, Torralba MG, Moncera K, Beeri K, Chen CS, Freese K, Hellerbrand C, Lee SM, Hoffman HM, Mehal WZ, Garcia-Tsao G, Mutlu EA, Keshavarzian A, Brown GD, Ho SB, Bataller R, Stärkel P, Fouts DE, Schnabl B
PMID: 28530644
The Journal of clinical investigation. 2017-06-30; 127.7: 2697-2704.
Nonalcoholic fatty liver disease with cirrhosis increases familial risk for advanced fibrosis
Caussy C, Soni M, Cui J, Bettencourt R, Schork N, Chen CH, Ikhwan MA, Bassirian S, Cepin S, Gonzalez MP, Mendler M, Kono Y, Vodkin I, Mekeel K, Haldorson J, Hemming A, Andrews B, Salotti J, Richards L, Brenner DA, Sirlin CB, Loomba R, Familial NAFLD Cirrhosis Research Consortium
PMID: 28628033
Nucleic acids research. 2017-06-20; 45.11: 6971-6980.
Large-scale recoding of a bacterial genome by iterative recombineering of synthetic DNA
Lau YH, Stirling F, Kuo J, Karrenbelt MAP, Chan YA, Riesselman A, Horton CA, Schäfer E, Lips D, Weinstock MT, Gibson DG, Way JC, Silver PA
PMID: 28499033
BMC genomics. 2017-06-12; 18.1: 458.
Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls
Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ
PMID: 28606096
Nature reviews. Microbiology. 2017-06-01; 15.6: 338-350.
Metal homeostasis and resistance in bacteria
Chandrangsu P, Rensing C, Helmann JD
PMID: 28344348
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. 2017-06-01; 174.4: 435-450.
Whole genome sequence association and ancestry-informed polygenic profile of EEG alpha in a Native American population
Peng Q, Schork NJ, Wilhelmsen KC, Ehlers CL
PMID: 28436151
Expert review of vaccines. 2017-06-01; 16.6: 535-544.
A bioinformatics roadmap for the human vaccines project
Scheuermann RH, Sinkovits RS, Schenkelberg T, Koff WC
PMID: 28434256