Publications

BMC bioinformatics. 2014-01-01; 15 Suppl 9.S15.
ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search
Ge P, Zhong C, Zhang S
PMID: 25253206
Molecular microbiology. 2014-01-01; 91.2: 300-14.
A Francisella virulence factor catalyses an essential reaction of biotin synthesis
Feng Y, Napier BA, Manandhar M, Henke SK, Weiss DS, Cronan JE
PMID: 24313380
International journal of bioinformatics research and applications. 2014-01-01; 10.4-5: 498-518.
Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements
Li Y, Zhong C, Zhang S
PMID: 24989865
International journal of bioinformatics research and applications. 2014-01-01; 10.4-5: 479-97.
Discovering non-coding RNA elements in Drosophila 3' untranslated regions
Zhong C, Andrews J, Zhang S
PMID: 24989864
PloS one. 2013-12-20; 8.12: e81352.
Microbiome analysis of stool samples from African Americans with colon polyps
Brim H, Yooseph S, Zoetendal EG, Lee E, Torralbo M, Laiyemo AO, Shokrani B, Nelson K, Ashktorab H
PMID: 24376500
Genome announcements. 2013-12-19; 1.6:
Genome Sequences of 28 Bordetella pertussis U.S. Outbreak Strains Dating from 2010 to 2012
Harvill ET, Goodfield LL, Ivanov Y, Meyer JA, Newth C, Cassiday P, Tondella ML, Liao P, Zimmerman J, Meert K, Wessel D, Berger J, Dean JM, Holubkov R, Burr J, Liu T, Brinkac L, Kim M, Losada L
PMID: 24356839
Chemistry & biology. 2013-12-19; 20.12: 1441-6.
Proofreading of noncognate acyl adenylates by an acyl-coenzyme a ligase
Manandhar M, Cronan JE
PMID: 24269150
PloS one. 2013-12-11; 8.12: e81862.
A metagenomic framework for the study of airborne microbial communities
Yooseph S, Andrews-Pfannkoch C, Tenney A, McQuaid J, Williamson S, Thiagarajan M, Brami D, Zeigler-Allen L, Hoffman J, Goll JB, Fadrosh D, Glass J, Adams MD, Friedman R, Venter JC
PMID: 24349140
Journal of biological engineering. 2013-12-10; 7.1: 30.
Assembly of eukaryotic algal chromosomes in yeast
Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA, Smith HO, Venter JC, Weyman PD
PMID: 24325901
Proceedings of the National Academy of Sciences of the United States of America. 2013-12-03; 110.49: 19802-7.
RNA-sequencing from single nuclei
Grindberg RV, Yee-Greenbaum JL, McConnell MJ, Novotny M, O'Shaughnessy AL, Lambert GM, Araúzo-Bravo MJ, Lee J, Fishman M, Robbins GE, Lin X, Venepally P, Badger JH, Galbraith DW, Gage FH, Lasken RS
PMID: 24248345