Publications

Omics : a journal of integrative biology. 2008-06-01; 12.2: 137-41.
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation
Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O
PMID: 18416670
Gene. 2008-05-31; 415.1-2: 13-22.
A novel SINE family occurs frequently in both genomic DNA and transcribed sequences in ixodid ticks of the arthropod sub-phylum Chelicerata
Sunter JD, Patel SP, Skilton RA, Githaka N, Knowles DP, Scoles GA, Nene V, de Villiers E, Bishop RP
PMID: 18394826
PLoS pathogens. 2008-05-30; 4.5: e1000076.
The evolutionary genetics and emergence of avian influenza viruses in wild birds
Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK
PMID: 18516303
Nature. 2008-05-29; 453.7195: 615-9.
The genomic and epidemiological dynamics of human influenza A virus
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC
PMID: 18418375
PloS one. 2008-05-28; 3.5: e2292.
The binary protein interactome of Treponema pallidum--the syphilis spirochete
Titz B, Rajagopala SV, Goll J, Häuser R, McKevitt MT, Palzkill T, Uetz P
PMID: 18509523
Journal of virology. 2008-05-01; 82.10: 4807-11.
Homologous recombination is very rare or absent in human influenza A virus
Boni MF, Zhou Y, Taubenberger JK, Holmes EC
PMID: 18353939
Infection and immunity. 2008-05-01; 76.5: 1889-96.
Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy
Bek-Thomsen M, Tettelin H, Hance I, Nelson KE, Kilian M
PMID: 18316382
BMC genomics. 2008-05-01; 9.204.
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Salzberg SL, Sommer DD, Schatz MC, Phillippy AM, Rabinowicz PD, Tsuge S, Furutani A, Ochiai H, Delcher AL, Kelley D, Madupu R, Puiu D, Radune D, Shumway M, Trapnell C, Aparna G, Jha G, Pandey A, Patil PB, Ishihara H, Meyer DF, Szurek B, Verdier V, Koebnik R, Dow JM, Ryan RP, Hirata H, Tsuyumu S, Won Lee S, Seo YS, Sriariyanum M, Ronald PC, Sonti RV, Van Sluys MA, Leach JE, White FF, Bogdanove AJ
PMID: 18452608
Journal of magnetic resonance (San Diego, Calif. : 1997). 2008-05-01; 192.1: 159-66.
NMR bioreactor development for live in-situ microbial functional analysis
Majors PD, McLean JS, Scholten JC
PMID: 18314365
Nature biotechnology. 2008-05-01; 26.5: 541-7.
The minimum information about a genome sequence (MIGS) specification
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A
PMID: 18464787