Publications

Nucleic acids research. 2006-10-24; 34.20: 5839-51.

Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences

Fouts DE

PMID: 17062630

Proceedings of the National Academy of Sciences of the United States of America. 2006-10-10; 103.41: 15200-5.

Evolution of sensory complexity recorded in a myxobacterial genome

Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Eisen J, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, Mackenzie C, Madupu R, Miller N, Shvartsbeyn A, Sullivan SA, Vaudin M, Wiegand R, Kaplan HB

PMID: 17015832

Proceedings of the National Academy of Sciences of the United States of America. 2006-10-03; 103.40: 14959-64.

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Scheix T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND

PMID: 17003129

Journal of bacteriology. 2006-10-01; 188.19: 6841-50.

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE, Khouri HM, Radune D, Sosa J, Dodson RJ, Sullivan SA, Rosovitz MJ, Madupu R, Brinkac LM, Durkin AS, Daugherty SC, Kothari SP, Giglio MG, Zhou L, Haft DH, Selengut JD, Davidsen TM, Yang Q, Zafar N, Ward NL

PMID: 16980487

Genomics. 2006-10-01; 88.4: 443-51.

Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome

Hamilton EP, Dear PH, Rowland T, Saks K, Eisen JA, Orias E

PMID: 16782302

Environmental microbiology. 2006-10-01; 8.10: 1805-15.

Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens

Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR

PMID: 16958761

Genome research. 2006-10-01; 16.10: 1241-51.

Uneven chromosome contraction and expansion in the maize genome

Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, Rabinowicz PD, Quackenbush J, Barbazuk WB, Wing RA, Birren B, Nusbaum C, Rounsley S, Mayer KF, Messing J

PMID: 16902087

Expert review of vaccines. 2006-10-01; 5.5: 687-94.

Towards a universal group B Streptococcus vaccine using multistrain genome analysis

Tettelin H, Medini D, Donati C, Masignani V

PMID: 17181441

BMC genomics. 2006-09-05; 7.228.

Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts

Romero CM, DeShazer D, Feldblyum T, Ravel J, Woods D, Kim HS, Yu Y, Ronning CM, Nierman WC

PMID: 16953889

Proceedings of the National Academy of Sciences of the United States of America. 2006-09-05; 103.36: 13555-9.

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ, Durkin AS, Daugherty SC, Sullivan SA, Khouri H, Mohamoud Y, Halpin R, Paulsen IT

PMID: 16938853