Publications

Nucleic acids research. 2017-01-04; 45.D1: D190-D199.
InterPro in 2017-beyond protein family and domain annotations
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL
PMID: 27899635
PeerJ. 2017-01-03; 5.e2733.
Comparative analysis of the Rotarix™ vaccine strain and G1P[8] rotaviruses detected before and after vaccine introduction in Belgium
Zeller M, Heylen E, Tamim S, McAllen JK, Kirkness EF, Akopov A, De Coster S, Van Ranst M, Matthijnssens J
PMID: 28070453
The ISME journal. 2017-01-01; 11.1: 201-211.
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO
PMID: 27392085
Methods in molecular biology (Clifton, N.J.). 2017-01-01; 1620.225-248.
Harnessing the Power of PCR Molecular Fingerprinting Methods and Next Generation Sequencing for Understanding Structure and Function in Microbial Communities
Phadke S, Salvador AF, Alves JI, Bretschger O, Alves MM, Pereira MA
PMID: 28540712
PloS one. 2017-01-01; 12.6: e0171758.
A comprehensive software suite for protein family construction and functional site prediction
Haft DR, Haft DH
PMID: 28182651
Frontiers in microbiology. 2017-01-01; 8.2568.
Redox Sensing within the Genus
Harris HW, Sánchez-Andrea I, McLean JS, Salas EC, Tran W, El-Naggar MY, Nealson KH
PMID: 29422884
mSystems. 2017-01-01; 2.1:
Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels
Levering J, Dupont CL, Allen AE, Palsson BO, Zengler K
PMID: 28217746
NPJ genomic medicine. 2017-01-01; 2.33.
A community effort to protect genomic data sharing, collaboration and outsourcing
Wang S, Jiang X, Tang H, Wang X, Bu D, Carey K, Dyke SO, Fox D, Jiang C, Lauter K, Malin B, Sofia H, Telenti A, Wang L, Wang W, Ohno-Machado L
PMID: 29263842
Human molecular genetics. 2017-01-01; 26.1: 233-242.
Identification of novel loci affecting circulating chromogranins and related peptides
Benyamin B, Maihofer AX, Schork AJ, Hamilton BA, Rao F, Schmid-Schönbein GW, Zhang K, Mahata M, Stridsberg M, Schork NJ, Biswas N, Hook VY, Wei Z, Montgomery GW, Martin NG, Nievergelt CM, Whitfield JB, O'Connor DT
PMID: 28011710
PloS one. 2017-01-01; 12.6: e0178717.
The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing
Dilley KA, Voorhies AA, Luthra P, Puri V, Stockwell TB, Lorenzi H, Basler CF, Shabman RS
PMID: 28636653