Publications

Nucleic acids research. 2007-01-01; 35.Database issue: e148.

A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform

Pandya GA, Holmes MH, Sunkara S, Sparks A, Bai Y, Verratti K, Saeed K, Venepally P, Jarrahi B, Fleischmann RD, Peterson SN

PMID: 18006572

Molecular systems biology. 2007-01-01; 3.128.

The protein network of bacterial motility

Rajagopala SV, Titz B, Goll J, Parrish JR, Wohlbold K, McKevitt MT, Palzkill T, Mori H, Finley RL, Uetz P

PMID: 17667950

Nucleic acids research. 2007-01-01; 35.Database issue: D274-9.

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels

Ren Q, Chen K, Paulsen IT

PMID: 17135193

Journal of molecular microbiology and biotechnology. 2007-01-01; 12.3-4: 165-79.

Large-scale comparative genomic analyses of cytoplasmic membrane transport systems in prokaryotes

Ren Q, Paulsen IT

PMID: 17587866

Nucleic acids research. 2007-01-01; 35.Database issue: D260-4.

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O

PMID: 17151080

Journal of clinical microbiology. 2007-01-01; 45.1: 39-46.

Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis

Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS

PMID: 17079498

Journal of bacteriology. 2007-01-01; 189.1: 52-64.

Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1

Rasko DA, Rosovitz MJ, Økstad OA, Fouts DE, Jiang L, Cer RZ, Kolstø AB, Gill SR, Ravel J

PMID: 17041058

Journal of bacteriology. 2007-01-01; 189.1: 38-51.

Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6

Lanie JA, Ng WL, Kazmierczak KM, Andrzejewski TM, Davidsen TM, Wayne KJ, Tettelin H, Glass JI, Winkler ME

PMID: 17041037

Genome biology. 2007-01-01; 8.3: R152.

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

Dalrymple BP, Kirkness EF, Nefedov M, McWilliam S, Ratnakumar A, Barris W, Zhao S, Shetty J, Maddox JF, O'Grady M, Nicholas F, Crawford AM, Smith T, de Jong PJ, McEwan J, Oddy VH, Cockett NE, International Sheep Genomics Consortium

PMID: 17663790

Nature genetics. 2007-01-01; 39.1: 5-6.

Toward a malaria haplotype map

Carlton JM

PMID: 17192778