Publications

Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.35-55.
From bacterial to microbial ecosystems (metagenomics)
Williamson SJ, Yooseph S
PMID: 22144147
Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.23-45.
Bioinformatics approaches and software for detection of secondary metabolic gene clusters
Fedorova ND, Moktali V, Medema MH
PMID: 23065606
Database : the journal of biological databases and curation. 2012-01-01; 2012.bas003.
AntiFam: a tool to help identify spurious ORFs in protein annotation
Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A
PMID: 22434837
PloS one. 2012-01-01; 7.5: e34064.
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR
PMID: 22479523
PloS one. 2012-01-01; 7.3: e33903.
Comparative omics-driven genome annotation refinement: application across Yersiniae
Schrimpe-Rutledge AC, Jones MB, Chauhan S, Purvine SO, Sanford JA, Monroe ME, Brewer HM, Payne SH, Ansong C, Frank BC, Smith RD, Peterson SN, Motin VL, Adkins JN
PMID: 22479471
Current chemical genomics. 2012-01-01; 6.8-17.
The HaloTag: Improving Soluble Expression and Applications in Protein Functional Analysis
N Peterson S, Kwon K
PMID: 23115610
Molecular biology and evolution. 2012-01-01; 29.1: 367-79.
Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C
PMID: 21903677
PloS one. 2012-01-01; 7.6: e29044.
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP)
Goll J, Thiagarajan M, Abubucker S, Huttenhower C, Yooseph S, Methé BA
PMID: 22719821
PloS one. 2012-01-01; 7.5: e29879.
Innate immune response of human alveolar macrophages during influenza A infection
Wang J, Nikrad MP, Travanty EA, Zhou B, Phang T, Gao B, Alford T, Ito Y, Nahreini P, Hartshorn K, Wentworth D, Dinarello CA, Mason RJ
PMID: 22396727
PLoS computational biology. 2012-01-01; 8.6: e1002358.
Metabolic reconstruction for metagenomic data and its application to the human microbiome
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C
PMID: 22719234

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