Publications

Infection and immunity. 2008-05-01; 76.5: 1889-96.
Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy
Bek-Thomsen M, Tettelin H, Hance I, Nelson KE, Kilian M
PMID: 18316382
Journal of virology. 2008-05-01; 82.10: 4807-11.
Homologous recombination is very rare or absent in human influenza A virus
Boni MF, Zhou Y, Taubenberger JK, Holmes EC
PMID: 18353939
PloS one. 2008-04-30; 3.4: e2058.
Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists
Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC
PMID: 18446194
BMC genomics. 2008-04-25; 9.190.
Burkholderia pseudomallei genome plasticity associated with genomic island variation
Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ
PMID: 18439288
Bioinformatics (Oxford, England). 2008-04-15; 24.8: 1035-40.
Consensus generation and variant detection by Celera Assembler
Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G
PMID: 18321888
PLoS genetics. 2008-04-11; 4.4: e1000046.
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC
PMID: 18404212
BMC bioinformatics. 2008-04-11; 9.191.
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S
PMID: 18405373
BMC bioinformatics. 2008-04-10; 9.182.
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Yooseph S, Li W, Sutton G
PMID: 18402669
BMC molecular biology. 2008-04-10; 9.35.
Transcriptional profile of the homologous recombination machinery and characterization of the EhRAD51 recombinase in response to DNA damage in Entamoeba histolytica
López-Casamichana M, Orozco E, Marchat LA, López-Camarillo C
PMID: 18402694
Nature. 2008-04-03; 452.7187: 629-32.
Functional metagenomic profiling of nine biomes
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F
PMID: 18337718