Publications

Applied and environmental microbiology. 2008-05-01; 74.9: 2646-58.

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1

Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM

PMID: 18344346

PloS one. 2008-04-30; 3.4: e2058.

Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists

Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC

PMID: 18446194

BMC genomics. 2008-04-25; 9.190.

Burkholderia pseudomallei genome plasticity associated with genomic island variation

Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ

PMID: 18439288

Bioinformatics (Oxford, England). 2008-04-15; 24.8: 1035-40.

Consensus generation and variant detection by Celera Assembler

Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G

PMID: 18321888

PLoS genetics. 2008-04-11; 4.4: e1000046.

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC

PMID: 18404212

BMC bioinformatics. 2008-04-11; 9.191.

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S

PMID: 18405373

BMC bioinformatics. 2008-04-10; 9.182.

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Yooseph S, Li W, Sutton G

PMID: 18402669

BMC molecular biology. 2008-04-10; 9.35.

Transcriptional profile of the homologous recombination machinery and characterization of the EhRAD51 recombinase in response to DNA damage in Entamoeba histolytica

López-Casamichana M, Orozco E, Marchat LA, López-Camarillo C

PMID: 18402694

Nature. 2008-04-03; 452.7187: 629-32.

Functional metagenomic profiling of nine biomes

Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F

PMID: 18337718

Eukaryotic cell. 2008-04-01; 7.4: 575-83.

Impaired ribosome biogenesis disrupts the integration between morphogenesis and nuclear duplication during the germination of Aspergillus fumigatus

Bhabhra R, Richie DL, Kim HS, Nierman WC, Fortwendel J, Aris JP, Rhodes JC, Askew DS

PMID: 18296619