Publications

Nature chemical biology. 2017-06-01; 13.6: 668-674.
The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes
Estrada P, Manandhar M, Dong SH, Deveryshetty J, Agarwal V, Cronan JE, Nair SK
PMID: 28414711
Journal of experimental botany. 2017-06-01; 68.14: 3937-3948.
The diversity of CO2-concentrating mechanisms in marine diatoms as inferred from their genetic content
Shen C, Dupont CL, Hopkinson BM
PMID: 28510761
Bioinformatics (Oxford, England). 2017-06-01; 33.11: 1725-1726.
LOCUST: a custom sequence locus typer for classifying microbial isolates
Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G
PMID: 28130240
Annals of translational medicine. 2017-06-01; 5.12: 249.
Insights into study design and statistical analyses in translational microbiome studies
Shankar J
PMID: 28706917
PloS one. 2017-05-31; 12.5: e0178199.
Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses
Lee AJ, Bhattacharya R, Scheuermann RH, Pickett BE
PMID: 28562637
Biointerphases. 2017-05-31; 12.2: 021004.
Outer membrane cytochromes/flavin interactions in Shewanella spp.-A molecular perspective
Babanova S, Matanovic I, Cornejo J, Bretschger O, Nealson K, Atanassov P
PMID: 28565913
Frontiers in microbiology. 2017-05-30; 8.949.
Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond
Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ
PMID: 28611750
Arthritis research & therapy. 2017-05-12; 19.1: 90.
Comprehensive analysis of treatment response phenotypes in rheumatoid arthritis for pharmacogenetic studies
Standish KA, Huang CC, Curran ME, Schork NJ
PMID: 28494788
Cell metabolism. 2017-05-02; 25.5: 1054-1062.e5.
Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease
Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE
PMID: 28467925
Genome research. 2017-05-01; 27.5: 722-736.
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM
PMID: 28298431