Publications

BMC genomics. 2007-01-17; 8.18.
Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome
Moskal WA, Wu HC, Underwood BA, Wang W, Town CD, Xiao Y
PMID: 17229318
Science (New York, N.Y.). 2007-01-12; 315.5809: 207-12.
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ
PMID: 17218520
Studies in mycology. 2007-01-01; 59.11-7.
What can comparative genomics tell us about species concepts in the genus Aspergillus?
Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, Nierman WC
PMID: 18490942
Nucleic acids research. 2007-01-01; 35.Database issue: D883-7.
The TIGR Rice Genome Annotation Resource: improvements and new features
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
PMID: 17145706
Nucleic acids research. 2007-01-01; 35.Database issue: e148.
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
Pandya GA, Holmes MH, Sunkara S, Sparks A, Bai Y, Verratti K, Saeed K, Venepally P, Jarrahi B, Fleischmann RD, Peterson SN
PMID: 18006572
Journal of bacteriology. 2007-01-01; 189.1: 388-402.
Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR
Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH
PMID: 17071756
Methods in molecular biology (Clifton, N.J.). 2007-01-01; 408.113-36.
Plant database resources at The Institute for Genomic Research
Chan AP, Rabinowicz PD, Quackenbush J, Buell CR, Town CD
PMID: 18287690
Journal of clinical microbiology. 2007-01-01; 45.1: 39-46.
Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis
Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS
PMID: 17079498
Breast cancer research : BCR. 2007-01-01; 9.1: R5.
Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas
Chanock SJ, Burdett L, Yeager M, Llaca V, Langerød A, Presswalla S, Kaaresen R, Strausberg RL, Gerhard DS, Kristensen V, Perou CM, Børresen-Dale AL
PMID: 17224074
Current pharmaceutical design. 2007-01-01; 13.14: 1415-36.
Computational and experimental approaches for modeling gene regulatory networks
Goutsias J, Lee NH
PMID: 17504165