Publications

Applied and environmental microbiology. 2008-05-01; 74.9: 2646-58.

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1

Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM

PMID: 18344346

Journal of magnetic resonance (San Diego, Calif. : 1997). 2008-05-01; 192.1: 159-66.

NMR bioreactor development for live in-situ microbial functional analysis

Majors PD, McLean JS, Scholten JC

PMID: 18314365

PloS one. 2008-04-30; 3.4: e2058.

Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists

Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC

PMID: 18446194

BMC genomics. 2008-04-25; 9.190.

Burkholderia pseudomallei genome plasticity associated with genomic island variation

Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ

PMID: 18439288

Bioinformatics (Oxford, England). 2008-04-15; 24.8: 1035-40.

Consensus generation and variant detection by Celera Assembler

Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G

PMID: 18321888

BMC bioinformatics. 2008-04-11; 9.191.

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S

PMID: 18405373

PLoS genetics. 2008-04-11; 4.4: e1000046.

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC

PMID: 18404212

BMC molecular biology. 2008-04-10; 9.35.

Transcriptional profile of the homologous recombination machinery and characterization of the EhRAD51 recombinase in response to DNA damage in Entamoeba histolytica

López-Casamichana M, Orozco E, Marchat LA, López-Camarillo C

PMID: 18402694

BMC bioinformatics. 2008-04-10; 9.182.

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Yooseph S, Li W, Sutton G

PMID: 18402669

Nature. 2008-04-03; 452.7187: 629-32.

Functional metagenomic profiling of nine biomes

Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F

PMID: 18337718