Publications

Proceedings of the National Academy of Sciences of the United States of America. 2015-01-27; 112.4: 1173-8.
Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean
Santoro AE, Dupont CL, Richter RA, Craig MT, Carini P, McIlvin MR, Yang Y, Orsi WD, Moran DM, Saito MA
PMID: 25587132
Genome announcements. 2015-01-22; 3.1:
Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains
Hupfeld M, Fouts DE, Loessner MJ, Klumpp J
PMID: 25614561
PLoS biology. 2015-01-20; 13.1: e1002050.
Where next for microbiome research?
Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H
PMID: 25602283
International journal of molecular sciences. 2015-01-16; 16.1: 2020-33.
Designed surface residue substitutions in [NiFe] hydrogenase that improve electron transfer characteristics
Yonemoto IT, Smith HO, Weyman PD
PMID: 25603181
eLife. 2015-01-16; 4.e05055.
The contrasting phylodynamics of human influenza B viruses
Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YC, Halpin R, Lee RT, Deng YM, Gunalan V, Lin X, Stockwell TB, Fedorova NB, Zhou B, Spirason N, Kühnert D, Bošková V, Stadler T, Costa AM, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth DE, Smith GJ, Barr IG
PMID: 25594904
Proceedings of the National Academy of Sciences of the United States of America. 2015-01-06; 112.1: 244-9.
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
He X, McLean JS, Edlund A, Yooseph S, Hall AP, Liu SY, Dorrestein PC, Esquenazi E, Hunter RC, Cheng G, Nelson KE, Lux R, Shi W
PMID: 25535390
Nucleic acids research. 2015-01-01; 43.Database issue: D213-21.
The InterPro protein families database: the classification resource after 15 years
Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, Punta M, Attwood TK, Sigrist CJ, Redaschi N, Rivoire C, Xenarios I, Kahn D, Guyot D, Bork P, Letunic I, Gough J, Oates M, Haft D, Huang H, Natale DA, Wu CH, Orengo C, Sillitoe I, Mi H, Thomas PD, Finn RD
PMID: 25428371
GigaScience. 2015-01-01; 4.3.
Optical mapping in plant comparative genomics
Tang H, Lyons E, Town CD
PMID: 25699175
PloS one. 2015-01-01; 10.9: e0139355.
Weighted Score Tests Implementing Model-Averaging Schemes in Detection of Rare Variants in Case-Control Studies
Coombes B, Basu S, Guha S, Schork N
PMID: 26436424
Nucleic acids research. 2015-01-01; 43.Database issue: D1003-9.
Araport: the Arabidopsis information portal
Krishnakumar V, Hanlon MR, Contrino S, Ferlanti ES, Karamycheva S, Kim M, Rosen BD, Cheng CY, Moreira W, Mock SA, Stubbs J, Sullivan JM, Krampis K, Miller JR, Micklem G, Vaughn M, Town CD
PMID: 25414324