Publications

PloS one. 2012-11-07; 7.11: e48289.

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

Fouts DE, Szpakowski S, Purushe J, Torralba M, Waterman RC, MacNeil MD, Alexander LJ, Nelson KE

PMID: 23144861

Virology journal. 2012-11-06; 9.261.

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing

Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB

PMID: 23131097

AMIA ... Annual Symposium proceedings. AMIA Symposium. 2012-11-03; 2012.779-88.

A machine learning approach for identifying anatomical locations of actionable findings in radiology reports

Roberts K, Rink B, Harabagiu SM, Scheuermann RH, Toomay S, Browning T, Bosler T, Peshock R

PMID: 23304352

Eukaryotic cell. 2012-11-01; 11.11: 1391-8.

Pseudohyphal growth of Cryptococcus neoformans is a reversible dimorphic transition in response to ammonium that requires Amt1 and Amt2 ammonium permeases

Lee SC, Phadke S, Sun S, Heitman J

PMID: 23002105

Influenza and other respiratory viruses. 2012-11-01; 6.6: 404-16.

Influenza research database: an integrated bioinformatics resource for influenza research and surveillance

Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH

PMID: 22260278

Journal of bacteriology. 2012-11-01; 194.22: 6356-7.

Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates

Varga JJ, Losada L, Zelazny AM, Brinkac L, Harkins D, Radune D, Hostetler J, Sampaio EP, Ronning CM, Nierman WC, Greenberg DE, Holland SM, Goldberg JB

PMID: 23105085

The Journal of general virology. 2012-11-01; 93.Pt 11: 2387-2398.

Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination

Dominguez SR, Sims GE, Wentworth DE, Halpin RA, Robinson CC, Town CD, Holmes KV

PMID: 22837419

Nucleic acids research. 2012-11-01; 40.20: 10375-83.

Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast

Tagwerker C, Dupont CL, Karas BJ, Ma L, Chuang RY, Benders GA, Ramon A, Novotny M, Montague MG, Venepally P, Brami D, Schwartz A, Andrews-Pfannkoch C, Gibson DG, Glass JI, Smith HO, Venter JC, Hutchison CA

PMID: 22941652

mBio. 2012-10-30; 3.6:

Back to the future for dermatophyte genomics

Rivera ZS, Losada L, Nierman WC

PMID: 23111872

Database : the journal of biological databases and curation. 2012-10-29; 2012.bas036.

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, Natale D, O'Donovan C, Ouellette F, Pruitt KD, Robinson-Rechavi M, Sansone SA, Schofield P, Sutton G, Van Auken K, Vasudevan S, Wu C, Young J, Mazumder R

PMID: 23110974