Publications

Journal of biomedical informatics. 2011-02-01; 44.1: 75-9.

Hematopoietic cell types: prototype for a revised cell ontology

Diehl AD, Augustine AD, Blake JA, Cowell LG, Gold ES, Gondré-Lewis TA, Masci AM, Meehan TF, Morel PA, Nijnik A, Peters B, Pulendran B, Scheuermann RH, Yao QA, Zand MS, Mungall CJ

PMID: 20123131

Infection and immunity. 2011-02-01; 79.2: 982-3.

Complete genome sequence of Mycoplasma bovis type strain PG45 (ATCC 25523)

Wise KS, Calcutt MJ, Foecking MF, Röske K, Madupu R, Methé BA

PMID: 21134966

Journal of immunology (Baltimore, Md. : 1950). 2011-01-15; 186.2: 1044-59.

Blocking of α4β7 gut-homing integrin during acute infection leads to decreased plasma and gastrointestinal tissue viral loads in simian immunodeficiency virus-infected rhesus macaques

Ansari AA, Reimann KA, Mayne AE, Takahashi Y, Stephenson ST, Wang R, Wang X, Li J, Price AA, Little DM, Zaidi M, Lyles R, Villinger F

PMID: 21149598

The Journal of infectious diseases. 2011-01-15; 203.2: 168-74.

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance

Ghedin E, Laplante J, Depasse J, Wentworth DE, Santos RP, Lepow ML, Porter J, Stellrecht K, Lin X, Operario D, Griesemer S, Fitch A, Halpin RA, Stockwell TB, Spiro DJ, Holmes EC, St George K

PMID: 21288815

PloS one. 2011-01-14; 6.1: e16016.

The temporal dynamics of differential gene expression in Aspergillus fumigatus interacting with human immature dendritic cells in vitro

Morton CO, Varga JJ, Hornbach A, Mezger M, Sennefelder H, Kneitz S, Kurzai O, Krappmann S, Einsele H, Nierman WC, Rogers TR, Loeffler J

PMID: 21264256

BMC genomics. 2011-01-11; 12.21.

Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners

Haft DH

PMID: 21223593

PloS one. 2011-01-10; 6.1: e15950.

Monitoring the long-term molecular epidemiology of the pneumococcus and detection of potential 'vaccine escape' strains

Pandya GA, McEllistrem MC, Venepally P, Holmes MH, Jarrahi B, Sanka R, Liu J, Karamycheva SA, Bai Y, Fleischmann RD, Peterson SN

PMID: 21264340

Journal of virology. 2011-01-01; 85.2: 828-34.

Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States

Nelson MI, Tan Y, Ghedin E, Wentworth DE, St George K, Edelman L, Beck ET, Fan J, Lam TT, Kumar S, Spiro DJ, Simonsen L, Viboud C, Holmes EC, Henrickson KJ, Musser JM

PMID: 21068250

PloS one. 2011-01-01; 6.12: e20388.

Going deeper: metagenome of a hadopelagic microbial community

Eloe EA, Fadrosh DW, Novotny M, Zeigler Allen L, Kim M, Lombardo MJ, Yee-Greenbaum J, Yooseph S, Allen EE, Lasken R, Williamson SJ, Bartlett DH

PMID: 21629664

Expert opinion on drug metabolism & toxicology. 2011-01-01; 7.5: 609-22.

Antiretroviral drug toxicity in relation to pharmacokinetics, metabolic profile and pharmacogenetics

Arab-Alameddine M, Décosterd LA, Buclin T, Telenti A, Csajka C

PMID: 21500966