Publications

Journal of computational biology : a journal of computational molecular cell biology. 2005-06-01; 12.5: 497-513.

A tool for analyzing mate pairs in assemblies (TAMPA)

Dew IM, Walenz B, Sutton G

PMID: 15952874

Insect biochemistry and molecular biology. 2005-06-01; 35.6: 585-95.

BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick

Guerrero FD, Miller RJ, Rousseau ME, Sunkara S, Quackenbush J, Lee Y, Nene V

PMID: 15857764

Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2005-05-20; 23.15: 3526-35.

Molecular staging for survival prediction of colorectal cancer patients

Eschrich S, Yang I, Bloom G, Kwong KY, Boulware D, Cantor A, Coppola D, Kruhøffer M, Aaltonen L, Orntoft TF, Quackenbush J, Yeatman TJ

PMID: 15908663

Proceedings of the National Academy of Sciences of the United States of America. 2005-05-17; 102.20: 7315-20.

Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella

Schmidt EW, Nelson JT, Rasko DA, Sudek S, Eisen JA, Haygood MG, Ravel J

PMID: 15883371

Molecular microbiology. 2005-05-01; 56.3: 625-37.

Promoter architecture and response to a positive regulator of archaeal transcription

Ouhammouch M, Langham GE, Hausner W, Simpson AJ, El-Sayed NM, Geiduschek EP

PMID: 15819620

Nature methods. 2005-05-01; 2.5: 351-6.

Standardizing global gene expression analysis between laboratories and across platforms

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H, Members of the Toxicogenomics Research Consortium

PMID: 15846362

Applied and environmental microbiology. 2005-05-01; 71.5: 2530-8.

DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens

Methé BA, Webster J, Nevin K, Butler J, Lovley DR

PMID: 15870343

International journal of systematic and evolutionary microbiology. 2005-05-01; 55.Pt 3: 1021-6.

Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales

Badger JH, Eisen JA, Ward NL

PMID: 15879228

Bioinformatics (Oxford, England). 2005-05-01; 21.9: 1782-8.

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding

Majoros WH, Pertea M, Salzberg SL

PMID: 15691859

Infection and immunity. 2005-05-01; 73.5: 2863-72.

Boosting of DNA vaccine-elicited gamma interferon responses in humans by exposure to malaria parasites

Wang R, Richie TL, Baraceros MF, Rahardjo N, Gay T, Banania JG, Charoenvit Y, Epstein JE, Luke T, Freilich DA, Norman J, Hoffman SL

PMID: 15845492