Publications

Genome research. 2004-10-01; 14.10A: 1851-60.

Human, mouse, and rat genome large-scale rearrangements: stability versus speciation

Zhao S, Shetty J, Hou L, Delcher A, Zhu B, Osoegawa K, de Jong P, Nierman WC, Strausberg RL, Fraser CM

PMID: 15364903

Science (New York, N.Y.). 2004-10-01; 306.5693: 79-86.

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism

Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS

PMID: 15459382

BMC genomics. 2004-09-29; 5.73.

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Strömvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P

PMID: 15453914

Proceedings of the National Academy of Sciences of the United States of America. 2004-09-28; 101.39: 14246-51.

Structural flexibility in the Burkholderia mallei genome

Nierman WC, DeShazer D, Kim HS, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC, Davidsen TD, Deboy RT, Dimitrov G, Dodson RJ, Durkin AS, Gwinn ML, Haft DH, Khouri H, Kolonay JF, Madupu R, Mohammoud Y, Nelson WC, Radune D, Romero CM, Sarria S, Selengut J, Shamblin C, Sullivan SA, White O, Yu Y, Zafar N, Zhou L, Fraser CM

PMID: 15377793

Proceedings of the National Academy of Sciences of the United States of America. 2004-09-28; 101.39: 14150-5.

Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing

Qiu WG, Schutzer SE, Bruno JF, Attie O, Xu Y, Dunn JJ, Fraser CM, Casjens SR, Luft BJ

PMID: 15375210

Proceedings of the National Academy of Sciences of the United States of America. 2004-09-14; 101.37: 13536-41.

Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing

Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P

PMID: 15347815

BMC genomics. 2004-09-13; 5.65.

An integrated 4249 marker FISH/RH map of the canine genome

Breen M, Hitte C, Lorentzen TD, Thomas R, Cadieu E, Sabacan L, Scott A, Evanno G, Parker HG, Kirkness EF, Hudson R, Guyon R, Mahairas GG, Gelfenbeyn B, Fraser CM, André C, Galibert F, Ostrander EA

PMID: 15363096

Journal of theoretical biology. 2004-09-07; 230.1: 133-44.

Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae

Yan B, Methé BA, Lovley DR, Krushkal J

PMID: 15276006

Briefings in bioinformatics. 2004-09-01; 5.3: 237-48.

Comparative genome assembly

Pop M, Phillippy A, Delcher AL, Salzberg SL

PMID: 15383210

Genetics. 2004-09-01; 168.1: 21-33.

Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance

Tanaka M, Earl AM, Howell HA, Park MJ, Eisen JA, Peterson SN, Battista JR

PMID: 15454524