Publications

PLoS computational biology. 2021-03-29; 17.3: e1008857.

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach

Espinoza JL, Dupont CL, O'Rourke A, Beyhan S, Morales P, Spoering A, Meyer KJ, Chan AP, Choi Y, Nierman WC, Lewis K, Nelson KE

PMID: 33780444

Journal of experimental botany. 2021-03-29; 72.7: 2491-2500.

Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production

Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra RD, Meyers BC, Michael TP

PMID: 33454741

Frontiers in microbiology. 2021-03-23; 12.644861.

Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing

Singh H, Clarke T, Brinkac L, Greco C, Nelson KE

PMID: 33833745

PloS one. 2021-03-18; 16.3: e0246613.

Hemagglutination Inhibition (HAI) antibody landscapes after vaccination with H7Nx virus like particles

Jang H, Ross TM

PMID: 33735274

mSphere. 2021-03-17; 6.2:

Erratum for Gomez et al., "Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints"

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR

PMID: 33731474

Circulation research. 2021-03-05; 128.5: 570-584.

Influenza Causes MLKL-Driven Cardiac Proteome Remodeling During Convalescence

Lin YH, Platt M, Platt MP, Gilley RP, Brown D, Dube PH, Yu Y, Gonzalez-Juarbe N

PMID: 33501852

bioRxiv : the preprint server for biology. 2021-03-01;

Negligible impact of SARS-CoV-2 variants on CD4 <sup>+</sup> and CD8 <sup>+</sup> T cell reactivity in COVID-19 exposed donors and vaccinees

Tarke A, Sidney J, Methot N, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, da Silva Antunes R, Frazier A, Rawlings SA, Smith DM, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A

PMID: 33688655

Poultry science. 2021-03-01; 100.3: 100893.

Prevalence, biosecurity factor, and antimicrobial susceptibility analysis of Salmonella species isolated from commercial duck farms in Korea

Kim TS, Kim GS, Son JS, Lai VD, Mo IP, Jang H

PMID: 33518320

Frontiers in immunology. 2021-02-25; 12.619262.

The Impact of Oral-Gut Inflammation in Cerebral Palsy

Ferreira ACFM, Eveloff RJ, Freire M, Santos MTBR

PMID: 33717115

Cellular and molecular gastroenterology and hepatology. 2021-02-22; 12.1: 293-320.

Intestinal α1-2-Fucosylation Contributes to Obesity and Steatohepatitis in Mice

Zhou R, Llorente C, Cao J, Zaramela LS, Zeng S, Gao B, Li SZ, Welch RD, Huang FQ, Qi LW, Pan C, Huang Y, Zhou P, Beussen I, Zhang Y, Bryam G, Fiehn O, Wang L, Liu EH, Yu RT, Downes M, Evans RM, Goglin K, Fouts DE, Brenner DA, Bode L, Fan X, Zengler K, Schnabl B

PMID: 33631374