Publications

EBioMedicine. 2018-02-15; 28.316-323.
Acetaminophen (Paracetamol) Use Modifies the Sulfation of Sex Hormones
Cohen IV, Cirulli ET, Mitchell MW, Jonsson TJ, Yu J, Shah N, Spector TD, Guo L, Venter JC, Telenti A
PMID: 29398597
Emerging microbes & infections. 2018-02-07; 7.1: 10.
Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens
Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D
PMID: 29410402
Nature communications. 2018-02-07; 9.1: 541.
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR
PMID: 29416032
Nature biotechnology. 2018-02-06; 36.2: 196.
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T
PMID: 29406516
Microbial ecology. 2018-02-01; 75.2: 303-309.
Bacterial Species Identified on the Skin of Bottlenose Dolphins Off Southern California via Next Generation Sequencing Techniques
Russo CD, Weller DW, Nelson KE, Chivers SJ, Torralba M, Grimes DJ
PMID: 29080910
The Journal of allergy and clinical immunology. 2018-02-01; 141.2: 775-777.e6.
Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells
Schulten V, Tripple V, Seumois G, Qian Y, Scheuermann RH, Fu Z, Locci M, Rosales S, Vijayanand P, Sette A, Alam R, Crotty S, Peters B
PMID: 28506846
Genome announcements. 2018-01-25; 6.4:
Whole-Genome Sequences of Zika Virus FLR Strains after Passage in Vero or C6/36 Cells
Moser LA, Oldfield LM, Fedorova N, Puri V, Shrivastava S, Amedeo P, Isom R, Hu L, Durbin A, Rocchi I, Williams T, Tan GS, Shabman RS, Bernard KA, Pickett BE
PMID: 29371358
F1000Research. 2018-01-23; 7.98.
A host subtraction database for virus discovery in human cell line sequencing data
Miller JR, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG
PMID: 31231504
PLoS pathogens. 2018-01-22; 14.1: e1006828.
Identification of a novel protein complex essential for effector translocation across the parasitophorous vacuole membrane of Toxoplasma gondii
Marino ND, Panas MW, Franco M, Theisen TC, Naor A, Rastogi S, Buchholz KR, Lorenzi HA, Boothroyd JC
PMID: 29357375
Clinical and translational gastroenterology. 2018-01-18; 9.1: e132.
Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease
Moustafa A, Li W, Anderson EL, Wong EHM, Dulai PS, Sandborn WJ, Biggs W, Yooseph S, Jones MB, Venter JC, Nelson KE, Chang JT, Telenti A, Boland BS
PMID: 29345635