Publications

Antimicrobial agents and chemotherapy. 2017-07-01; 61.7:
NDM-5 and OXA-181 Beta-Lactamases, a Significant Threat Continues To Spread in the Americas
Rojas LJ, Hujer AM, Rudin SD, Wright MS, Domitrovic TN, Marshall SH, Hujer KM, Richter SS, Cober E, Perez F, Adams MD, van Duin D, Bonomo RA
PMID: 28461314
Bioinformatics (Oxford, England). 2017-07-01; 33.13: 1944-1952.
FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis
Zhang Y, Topham DJ, Thakar J, Qiu X
PMID: 28334094
The Journal of clinical investigation. 2017-06-30; 127.7: 2829-2841.
Intestinal fungi contribute to development of alcoholic liver disease
Yang AM, Inamine T, Hochrath K, Chen P, Wang L, Llorente C, Bluemel S, Hartmann P, Xu J, Koyama Y, Kisseleva T, Torralba MG, Moncera K, Beeri K, Chen CS, Freese K, Hellerbrand C, Lee SM, Hoffman HM, Mehal WZ, Garcia-Tsao G, Mutlu EA, Keshavarzian A, Brown GD, Ho SB, Bataller R, Stärkel P, Fouts DE, Schnabl B
PMID: 28530644
The Journal of clinical investigation. 2017-06-30; 127.7: 2697-2704.
Nonalcoholic fatty liver disease with cirrhosis increases familial risk for advanced fibrosis
Caussy C, Soni M, Cui J, Bettencourt R, Schork N, Chen CH, Ikhwan MA, Bassirian S, Cepin S, Gonzalez MP, Mendler M, Kono Y, Vodkin I, Mekeel K, Haldorson J, Hemming A, Andrews B, Salotti J, Richards L, Brenner DA, Sirlin CB, Loomba R, Familial NAFLD Cirrhosis Research Consortium
PMID: 28628033
Nucleic acids research. 2017-06-20; 45.11: 6971-6980.
Large-scale recoding of a bacterial genome by iterative recombineering of synthetic DNA
Lau YH, Stirling F, Kuo J, Karrenbelt MAP, Chan YA, Riesselman A, Horton CA, Schäfer E, Lips D, Weinstock MT, Gibson DG, Way JC, Silver PA
PMID: 28499033
BMC genomics. 2017-06-12; 18.1: 458.
Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls
Buckley AR, Standish KA, Bhutani K, Ideker T, Lasken RS, Carter H, Harismendy O, Schork NJ
PMID: 28606096
Nature chemical biology. 2017-06-01; 13.6: 668-674.
The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes
Estrada P, Manandhar M, Dong SH, Deveryshetty J, Agarwal V, Cronan JE, Nair SK
PMID: 28414711
Journal of experimental botany. 2017-06-01; 68.14: 3937-3948.
The diversity of CO2-concentrating mechanisms in marine diatoms as inferred from their genetic content
Shen C, Dupont CL, Hopkinson BM
PMID: 28510761
Bioinformatics (Oxford, England). 2017-06-01; 33.11: 1725-1726.
LOCUST: a custom sequence locus typer for classifying microbial isolates
Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G
PMID: 28130240
Annals of translational medicine. 2017-06-01; 5.12: 249.
Insights into study design and statistical analyses in translational microbiome studies
Shankar J
PMID: 28706917