Publications

Expert review of vaccines. 2017-06-01; 16.6: 535-544.
A bioinformatics roadmap for the human vaccines project
Scheuermann RH, Sinkovits RS, Schenkelberg T, Koff WC
PMID: 28434256
Nature reviews. Microbiology. 2017-06-01; 15.6: 338-350.
Metal homeostasis and resistance in bacteria
Chandrangsu P, Rensing C, Helmann JD
PMID: 28344348
Biointerphases. 2017-05-31; 12.2: 021004.
Outer membrane cytochromes/flavin interactions in Shewanella spp.-A molecular perspective
Babanova S, Matanovic I, Cornejo J, Bretschger O, Nealson K, Atanassov P
PMID: 28565913
PloS one. 2017-05-31; 12.5: e0178199.
Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses
Lee AJ, Bhattacharya R, Scheuermann RH, Pickett BE
PMID: 28562637
Frontiers in microbiology. 2017-05-30; 8.949.
Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond
Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ
PMID: 28611750
Arthritis research & therapy. 2017-05-12; 19.1: 90.
Comprehensive analysis of treatment response phenotypes in rheumatoid arthritis for pharmacogenetic studies
Standish KA, Huang CC, Curran ME, Schork NJ
PMID: 28494788
Cell metabolism. 2017-05-02; 25.5: 1054-1062.e5.
Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease
Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE
PMID: 28467925
Trends in microbiology. 2017-05-01; 25.5: 362-374.
Ecology of the Oral Microbiome: Beyond Bacteria
Baker JL, Bor B, Agnello M, Shi W, He X
PMID: 28089325
Journal of bacteriology. 2017-05-01; 199.9:
Assessment of Insertion Sequence Mobilization as an Adaptive Response to Oxidative Stress in Acinetobacter baumannii Using IS-seq
Wright MS, Mountain S, Beeri K, Adams MD
PMID: 28193905
Genome research. 2017-05-01; 27.5: 722-736.
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM
PMID: 28298431