Publications

Journal of phycology. 2022-02-01; 58.1: 36-54.
Blowin' in the wind: Dispersal, structure, and metacommunity dynamics of aeolian diatoms in the McMurdo Sound region, Antarctica
Schulte NO, Khan AL, Smith EW, Zoumplis A, Kaul D, Allen AE, Adams BJ, McKnight DM
PMID: 34817069
Nature methods. 2022-02-01; 19.2: 134-136.
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, Wang M
PMID: 34862502
The New phytologist. 2022-02-01; 233.4: 1797-1812.
Multiplexed CRISPR/Cas9 editing of the long-chain acyl-CoA synthetase family in the diatom Phaeodactylum tricornutum reveals that mitochondrial ptACSL3 is involved in the synthesis of storage lipids
Hao X, Chen W, Amato A, Jouhet J, Maréchal E, Moog D, Hu H, Jin H, You L, Huang F, Moosburner M, Allen AE, Gong Y
PMID: 34882804
The ISME journal. 2022-02-01; 16.2: 358-369.
Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean
Manck LE, Park J, Tully BJ, Poire AM, Bundy RM, Dupont CL, Barbeau KA
PMID: 34341506
Cell. 2022-01-20; 185.2: 345-360.e28.
Fundamental behaviors emerge from simulations of a living minimal cell
Thornburg ZR, Bianchi DM, Brier TA, Gilbert BR, Earnest TM, Melo MCR, Safronova N, Sáenz JP, Cook AT, Wise KS, Hutchison CA, Smith HO, Glass JI, Luthey-Schulten Z
PMID: 35063075
Plant direct. 2022-01-20; 6.1: e376.
Proteomic analysis of metabolic pathways supports chloroplast-mitochondria cross-talk in a Cu-limited diatom
Hippmann AA, Schuback N, Moon KM, McCrow JP, Allen AE, Foster LF, Green BR, Maldonado MT
PMID: 35079683
Frontiers in oral health. 2022-01-07; 2.796140.
Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm
Uranga C, Nelson KE, Edlund A, Baker JL
PMID: 35048077
Metabolites. 2022-01-05; 12.1:
Machine Learning Applied to Omics Datasets Predicts Mortality in Patients with Alcoholic Hepatitis
Gao B, Wu TC, Lang S, Jiang L, Duan Y, Fouts DE, Zhang X, Tu XM, Schnabl B
PMID: 35050163
Pediatric research. 2022-01-01; 91.1: 154-162.
Antibiotics at birth and later antibiotic courses: effects on gut microbiota
Ainonen S, Tejesvi MV, Mahmud MR, Paalanne N, Pokka T, Li W, Nelson KE, Salo J, Renko M, Vänni P, Pirttilä AM, Tapiainen T
PMID: 33824448
Journal of hepatology. 2021-12-01; 75.6: 1465-1475.
Intestinal virome and therapeutic potential of bacteriophages in liver disease
Hsu C, Hsu CL, Duan Y, Fouts DE, Schnabl B
PMID: 34437908

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