GCID Publications

PloS one. 2008-04-30; 3.4: e2058.
Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists
Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC
PMID: 18446194
BMC genomics. 2008-04-25; 9.190.
Burkholderia pseudomallei genome plasticity associated with genomic island variation
Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ
PMID: 18439288
PLoS genetics. 2008-04-11; 4.4: e1000046.
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC
PMID: 18404212
Nature. 2008-04-03; 452.7187: 629-32.
Functional metagenomic profiling of nine biomes
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F
PMID: 18337718
Clinical and vaccine immunology : CVI. 2008-03-01; 15.3: 484-91.
Borrelia burgdorferi complement regulator-acquiring surface protein 2 (CspZ) as a serological marker of human Lyme disease
Kraiczy P, Seling A, Brissette CA, Rossmann E, Hunfeld KP, Bykowski T, Burns LH, Troese MJ, Cooley AE, Miller JC, Brade V, Wallich R, Casjens S, Stevenson B
PMID: 18160620
PLoS pathogens. 2008-02-29; 4.2: e1000012.
Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918
Nelson MI, Viboud C, Simonsen L, Bennett RT, Griesemer SB, St George K, Taylor J, Spiro DJ, Sengamalay NA, Ghedin E, Taubenberger JK, Holmes EC
PMID: 18463694
Genome biology. 2008-01-11; 9.1: R7.
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR
PMID: 18190707
Journal of virology. 2008-01-01; 82.2: 596-601.
The influenza virus resource at the National Center for Biotechnology Information
Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Zaslavsky L, Tatusova T, Ostell J, Lipman D
PMID: 17942553
BMC evolutionary biology. 2007-09-26; 7.174.
Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes
Patron NJ, Waller RF, Cozijnsen AJ, Straney DC, Gardiner DM, Nierman WC, Howlett BJ
PMID: 17897469
PLoS pathogens. 2007-09-14; 3.9: 1220-8.
Phylogenetic analysis reveals the global migration of seasonal influenza A viruses
Nelson MI, Simonsen L, Viboud C, Miller MA, Holmes EC
PMID: 17941707

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