Publications

BMC bioinformatics. 2022-10-12; 23.1: 419.
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
Espinoza JL, Dupont CL
PMID: 36224545
Scientific reports. 2022-10-06; 12.1: 16731.
A novel vaccine based on SARS-CoV-2 CD4+ and CD8+ T cell conserved epitopes from variants Alpha to Omicron
Palatnik-de-Sousa I, Wallace ZS, Cavalcante SC, Ribeiro MPF, Silva JABM, Cavalcante RC, Scheuermann RH, Palatnik-de-Sousa CB
PMID: 36202985
Journal of dental research. 2022-10-01; 101.11: 1274-1288.
A Roadmap for the Human Oral and Craniofacial Cell Atlas
Caetano AJ, Human Cell Atlas Oral and Craniofacial Bionetwork, Sequeira I, Byrd KM
PMID: 36154725
PloS one. 2022-09-23; 17.9: e0275070.
Machine learning for cell type classification from single nucleus RNA sequencing data
Le H, Peng B, Uy J, Carrillo D, Zhang Y, Aevermann BD, Scheuermann RH
PMID: 36149937
The journal of physical chemistry. B. 2022-09-15; 126.36: 6820-6834.
Toward the Complete Functional Characterization of a Minimal Bacterial Proteome
Bianchi DM, Pelletier JF, Hutchison CA, Glass JI, Luthey-Schulten Z
PMID: 36048731
Proceedings of the National Academy of Sciences of the United States of America. 2022-09-13; 119.37: e2200014119.
Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean
Saunders JK, McIlvin MR, Dupont CL, Kaul D, Moran DM, Horner T, Laperriere SM, Webb EA, Bosak T, Santoro AE, Saito MA
PMID: 36067300
Proceedings of the National Academy of Sciences of the United States of America. 2022-09-13; 119.37: e2204717119.
SARS-CoV-2 variant spike and accessory gene mutations alter pathogenesis
McGrath ME, Xue Y, Dillen C, Oldfield L, Assad-Garcia N, Zaveri J, Singh N, Baracco L, Taylor LJ, Vashee S, Frieman MB
PMID: 36040867
Viruses. 2022-09-13; 14.9:
Co-Deletion of A238L and EP402R Genes from a Genotype IX African Swine Fever Virus Results in Partial Attenuation and Protection in Swine
Abkallo HM, Hemmink JD, Oduor B, Khazalwa EM, Svitek N, Assad-Garcia N, Khayumbi J, Fuchs W, Vashee S, Steinaa L
PMID: 36146830
mBio. 2022-08-30; 13.4: e0163022.
Metabolite Damage and Damage Control in a Minimal Genome
Haas D, Thamm AM, Sun J, Huang L, Sun L, Beaudoin GAW, Wise KS, Lerma-Ortiz C, Bruner SD, Breuer M, Luthey-Schulten Z, Lin J, Wilson MA, Brown G, Yakunin AF, Kurilyak I, Folz J, Fiehn O, Glass JI, Hanson AD, Henry CS, de Crécy-Lagard V
PMID: 35862786
Journal of fungi (Basel, Switzerland). 2022-08-16; 8.8:
Coccidioides Species: A Review of Basic Research: 2022
Kirkland TN, Stevens DA, Hung CY, Beyhan S, Taylor JW, Shubitz LF, Duttke SH, Heidari A, Johnson RH, Deresinski SC, Lauer A, Fierer J
PMID: 36012847

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