Publications

Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016-01-01; 89.1: 13-5.
Automated analysis of flow cytometry data comes of age
Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH
PMID: 26812230
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016-01-01; 89.1: 71-88.
Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure
Hsiao C, Liu M, Stanton R, McGee M, Qian Y, Scheuermann RH
PMID: 26274018
Standards in genomic sciences. 2016-01-01; 11.86.
Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark
Qin Y, Wang D, Brandt KK, Rensing C
PMID: 27833718
Molecular microbiology. 2016-01-01; 99.1: 55-70.
Galactofuranose in Mycoplasma mycoides is important for membrane integrity and conceals adhesins but does not contribute to serum resistance
Schieck E, Lartigue C, Frey J, Vozza N, Hegermann J, Miller RA, Valguarnera E, Muriuki C, Meens J, Nene V, Naessens J, Weber J, Lowary TL, Vashee S, Feldman MF, Jores J
PMID: 26354009
Drug metabolism and disposition: the biological fate of chemicals. 2016-01-01; 44.1: 151-61.
In Vivo Profiling and Distribution of Known and Novel Phase I and Phase II Metabolites of Efavirenz in Plasma, Urine, and Cerebrospinal Fluid
Aubert V, Battegay M, Bernasconi E, Böni J, Braun DL, Bucher HC, Burton-Jeangros C, Calmy A, Cavassini M, Dollenmaier G, Egger M, Elzi L, Fehr J, Fellay J, Furrer H, Fux CA, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hoffmann M, Hösli I, Kahlert C, Kaiser L, Keiser O, Klimkait T, Kouyos R, Kovari H, Ledergerber B, Martinetti G, Martinez de Tejada B, Marzolini C, Metzner K, Müller N, Nadal D, Nicca D, Pantaleo G, Rauch A, Regenass S, Rudin C, Schöni-Affolter F, Schmid P, Speck R, Stöckle M, Tarr P, Trkola A, Vernazza P, Weber R, Yerly S
PMID: 26553012
PloS one. 2016-01-01; 11.3: e0151705.
Relative Importance and Additive Effects of Maternal and Infant Risk Factors on Childhood Asthma
Wu P, Feldman AS, Rosas-Salazar C, James K, Escobar G, Gebretsadik T, Li SX, Carroll KN, Walsh E, Mitchel E, Das S, Kumar R, Yu C, Dupont WD, Hartert TV
PMID: 27002979
Microbial ecology. 2016-01-01; 71.1: 233-42.
Minimally Invasive Sampling Method Identifies Differences in Taxonomic Richness of Nasal Microbiomes in Young Infants Associated with Mode of Delivery
Shilts MH, Rosas-Salazar C, Tovchigrechko A, Larkin EK, Torralba M, Akopov A, Halpin R, Peebles RS, Moore ML, Anderson LJ, Nelson KE, Hartert TV, Das SR
PMID: 26370110
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2016-01-01; 89.1: 16-21.
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes
Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, McLachlan GJ, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, Wang K, Finak G, Gottardo R, Mosmann T, Nolan GP, Scheuermann RH, Brinkman RR
PMID: 26447924
Bacteriophage. 2016-01-01; 6.4: e1251381.
Structural proteins of Enterococcus faecalis bacteriophage ϕEf11
Stevens RH, Zhang H, Hsiao C, Kachlany S, Tinoco EM, Depew J, Fouts DE
PMID: 28090386
PloS one. 2016-01-01; 11.10: e0155757.
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution
Díez B, Nylander JA, Ininbergs K, Dupont CL, Allen AE, Yooseph S, Rusch DB, Bergman B
PMID: 27196065